Lactobacillus paragasseri: LpgJCM5343_10900
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Entry
LpgJCM5343_10900 CDS
T05840
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lpw
Lactobacillus paragasseri
Pathway
lpw03030
DNA replication
lpw03430
Mismatch repair
lpw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LpgJCM5343_10900 (dnaE)
03430 Mismatch repair
LpgJCM5343_10900 (dnaE)
03440 Homologous recombination
LpgJCM5343_10900 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpw03032
]
LpgJCM5343_10900 (dnaE)
03400 DNA repair and recombination proteins [BR:
lpw03400
]
LpgJCM5343_10900 (dnaE)
Enzymes [BR:
lpw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LpgJCM5343_10900 (dnaE)
DNA replication proteins [BR:
lpw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LpgJCM5343_10900 (dnaE)
DNA repair and recombination proteins [BR:
lpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LpgJCM5343_10900 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
BBD48737
LinkDB
All DBs
Position
complement(1139536..1142652)
Genome browser
AA seq
1038 aa
AA seq
DB search
MGAVSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIK
PLLGMQLRINGLVDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENVLELEELK
KYLGHLVIITPSNIHSELKMLQANNPKMGANYIRTLKDSVPTSSSIYLGVYADQGQQEYI
NYLRSLATQFELLLTAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLAKQAGSHYLKN
SEELQVNYRKFGIEDALENAEKIGQICSAQITFQDPQLPKFKQNKFPTSKEYLHSLAQNG
LAKRFKGRIPEKYQARLDYELKVINEMGFDDYFLIVWDVMNFAHSVHITTGPGRGSAAGS
LVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDNRRDEVIKYMFEKYGMNHAA
QILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGKITLAEAYQKSKELQLLVNT
NAFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQAGPLGIPVTQQTKLNVES
LGLLKIDFLGLRNLTILGNIISALKLEGVEIDPNQIPLNDQETLALFQRGDTDAVFQFES
DGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINRKHGKEKVQYPDPSLKKILGPT
YGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVIQKEREKFIQGAVKLGRRKEI
AEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGAFYLSLLNSNIGNRNKIAQY
LMQAQEAGIKTLPPDIENSKADFSLENGKILVGLKAVRGLRSDLLKQILEIKRPIKSMTD
FLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKINKDLVESVKMAGSNLSLFETLEP
KIEEEKMPTAAEKSAMEVEAMGFSTGINPIIAVQKYARKYNAKRLQAFENNEQGIAVGKL
MKIKQITTKKGDNMAFAVFSDSSGDKDFTIFPQVWEKVGENLKIGEIYLLQVKTQSDRFS
PTKTQFLLSNARKVNFKD
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgggagcagtgagtctgcaaaaccttagtagttttacattactggagagtccaactaaa
gttaaagatttagctgaaaacgcaaagaaaaaaggttattctgcactcgccttgacggat
gtaaatattacctatggcttagttaatttttataaagctgcaaaagaaactggaattaag
cctttattagggatgcagttaagaatcaacggcttggttgaccaggcaaataagtatgat
ttaattgtcattgctaaagacgatcaaggatataaaaatattttgcgtttatcaagtgcg
gtcaatcttttaaccgaaaatggtgaaaaagaaaatgttttagagcttgaagaattaaaa
aaatatctcggtcacttagttataattacgcctagtaacatacatagcgaactaaagatg
ctgcaagctaacaatcctaaaatgggagctaattatatccgtacactgaaagattctgtt
cctacatcttcatcaatttatttaggcgtttatgctgatcaaggacagcaagaatatata
aattatcttcgttcattagcaacgcaatttgagttattgttaactgcggttgaagacgga
caatatcttaatcgtaacgaacaatttttaagaagaactctgcaagctattaagagtaac
acccatttagaaaatgtggagcaattagctaagcaagctggttcgcattacttaaaaaat
agcgaagaattgcaggttaattatcgaaaatttgggattgaagatgctttagaaaacgct
gaaaaaataggtcaaatttgcagtgctcagattacgtttcaagatcctcaattgccaaag
ttcaaacaaaataagtttccaacatcaaaagaatatttgcattcattagcacaaaatgga
cttgctaaaagatttaaaggaaggattccggaaaaataccaagcaagattagattatgaa
ctaaaagtaatcaatgagatgggatttgatgattattttcttattgtgtgggatgtgatg
aactttgcccatagtgttcacattacaactggacctggacgaggctcagctgctggctca
cttgtttcatatgctttaagaattactgaagtcgatccacttgaatataatttgttattt
gaacgtttcttaaatcccgctcgtcaacaaatgccagatattgacttagatattccagat
aatcgacgtgatgaagtaataaaatatatgtttgaaaaatatggaatgaatcacgccgcc
caaattttaacctttggtactttggctgctaagcaagttctaaaagatgtttgtcgtgtt
tttggactaaataaagttgaaacctatcgctggttagatgcaatcccgcatgcaaaagga
aaaatcactttagcagaagcatatcaaaaatcaaaagagttacagcttttagttaataca
aatgcttttagtaaaattctatttgcgactgctgagcatttagaaaatttgccgcgtcat
tattcaattcatgcagctggtttagtaatcactgatgattcattagcagagattgtgggc
ttacaggcgggacctttaggaatacctgtaacgcagcaaaccaaattaaacgttgagtcc
ttaggattattgaaaattgactttttaggcttaagaaacttaactattttaggcaacatt
atttcagcgttaaagttagaaggagttgaaattgatcctaatcagattccgttaaatgat
caagaaacgcttgctttatttcagcgtggtgacacagatgccgtcttccaatttgaatcc
gatggaattaagcgcgttttagagcagcttcatcctgacagttttgaagacattgtcgct
gtaaatgctttatatcgcccaggtccaatgaataatattggtcatttcattaatagaaaa
catggcaaggaaaaagttcaatatcctgatcctagcttaaaaaaaatcttaggaccaact
tatggcgttttagtttatcaagagcaagttatgcagacggctcaagttttagctggtttt
tctttaggtgaagccgatcttttaaggcgagctatgtctaagaaaaacgctgatgtgatc
caaaaagaacgagagaagtttattcaaggcgctgtaaaacttggcagacgaaaagagata
gcagagcaggtttatgattatattgctcagtttgctaattatggatttaaccgttcgcat
gcagttgcatatagtaaaatcgccttttggctggcctattttaaggttcattatcctggc
gctttttatctttctcttttgaacagtaatattggcaatcgtaataagatcgctcaatac
ttgatgcaagcacaagaagctggaattaagactttgccaccagatattgagaacagtaag
gcggatttttcgcttgaaaacggcaaaattttagttggcttgaaggcagttcgcggatta
agaagtgatttgctgaaacaaatattagaaattaagcgtccgattaagtcaatgactgat
ttcttgtggaagattgataataatttgttgagtgctgatgctattgcaaatttaattaaa
gcaggtgcttttgatcgactagctccaaatcgaaatgaacttttaaaaataaataaagac
ctagttgaaagtgtaaagatggcaggttcaaatttatctttatttgaaactttggagccc
aaaatcgaagaagaaaaaatgccaactgctgctgaaaaatcagcgatggaagtagaagca
atgggctttagtactggaattaacccaatcattgctgttcaaaaatatgctagaaagtat
aacgcaaaaagattgcaggcttttgaaaacaatgaacaggggattgcagttggcaaatta
atgaagataaagcaaatcaccactaaaaaaggtgataatatggctttcgcggtctttagc
gatagtagtggcgataaagattttacgatctttcctcaggtatgggagaaagtaggagaa
aacttaaagattggcgaaatatatttattgcaggtgaagacgcaaagtgatcgctttagt
ccgacaaagacgcagtttttactttcaaatgctcgcaaagttaattttaaagattaa
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