Lactobacillus paragasseri: LpgJCM5343_13150
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Entry
LpgJCM5343_13150 CDS
T05840
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lpw
Lactobacillus paragasseri
Pathway
lpw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LpgJCM5343_13150 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpw03400
]
LpgJCM5343_13150 (uvrA)
DNA repair and recombination proteins [BR:
lpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LpgJCM5343_13150 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LpgJCM5343_13150 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
RsgA_GTPase
AAA_29
nSTAND1
nSTAND3
AAA_22
AAA_23
DnaJ_CXXCXGXG
AAA_33
AAA_18
AAA_21
APS_kinase
BCA_ABC_TP_C
AAA_14
SLFN-g3_helicase
AAA_24
NACHT
Mtrc-MtrF_II-IV_dom
Viral_helicase1
cobW
RNA_helicase
DUF87
NTPase_1
AAA_15
DUF1924
MMR_HSR1
Septin
Dynamin_N
Motif
Other DBs
NCBI-ProteinID:
BBD48962
LinkDB
All DBs
Position
complement(1350663..1353524)
Genome browser
AA seq
953 aa
AA seq
DB search
MANDKIVIHGAREHNLKDISLSIPKDKLVVITGLSGSGKSSLAFDTLYAEGRRRYVESLS
SYARQFLGQMDKADVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGHP
ICPNDGTLIERQSVDQMVDRVMDLPERSRIQILAPIIRAKRGEHKEVFKRIQRAGYVRVI
VDGEMHEITDDFDLDKNKRHSIDIVVDRLIVKENIRSRLFDSVEAALRLADGYMDVDVIK
GERINFSEYYACPICGFTVGEMEPRLFSFNAPFGACPDCDGLGMKLSVDEDLVIPDKDKT
LAEGALVPWSNSKYYTAMLEQACMALKIPVDKPYKKLTKKQKDLILNGSKGKKIKFHLEG
DFGVNDTVQEFEGILNNINRRYHHPMSKFMRDAMGKYMTELTCSTCHGKRLNEKALAVKV
NGKDIAEASDLSISKSLNFFNSVKLSEQEKMIAKPILKEVRDRLTFLKNVGLDYLTLSRS
AGTLSGGEAQRIRLATQIGSNLSGVMYILDEPSIGLHQRDNDRLISSLKKMRDLGNSLIV
VEHDDETMKQADYLVDMGPGAGVYGGKVMAAGTPEEVMKNPKSLTGQYLSGKKIVPVPLE
RRKGNGKKITVTGAAENNLKDISVDFPLGKFVVVTGVSGSGKSTLVNLILKRALAQKLNN
NSAKPGKYKSIKGYKNIEKIIDIDQSPIGRTPRSNPATYTSVFDDIRALFAQTNEAKMRG
YTKARFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGTRYNSETLEVTYREKNI
SQVLNMTINEACKFFENIPKIHRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLASELQ
KLSTGNNFYILDEPTTGLHTDDIKRLLEVLQRLVDEGNTVLIIEHNLDVIKNADWLIDLG
PEGGDGGGQVVATGTPEEVAEVKESYTGQYLKPVLKRDIKLTKKLMNSKDEQE
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgataaaattgtaattcatggagcgcgtgaacataatttaaaagatataagt
ttatcgattccaaaagataaattagtagttattaccggcttatcaggctcaggaaaaagt
tcattagctttcgatactttatatgctgaaggtagaagaagatatgttgagtcactatca
agttatgctagacaatttttaggccaaatggataaggctgatgttgattcaattgatggc
ttaaatcccgcaatttccattgatcaaaagacgacgtctcataatccgcgttcaacagtt
ggaactgtaacagaaattaatgactatttgcgtttattgtgggcacgcgttggtcatcca
atttgtccaaatgatggaactttgattgagagacaaagcgtggatcagatggtagatcgc
gtaatggatttacctgaaagaagcagaattcagattttagctccaattattcgcgctaaa
agaggagaacataaggaagtatttaaacgaatccagcgtgcgggttatgtacgggtaatt
gtagacggtgaaatgcatgaaatcactgatgattttgacctagacaaaaataaacggcac
agtattgatattgttgttgaccgcttaattgttaaagaaaatattcgaagtcgtttattt
gattctgttgaagctgctcttcgtttggcagatggctacatggatgttgatgtgattaag
ggtgaacgtattaacttttctgaatactatgcctgtccaatatgtggctttacggtcggc
gaaatggagcctcgtttattttcatttaacgcgccttttggagcttgtcctgattgtgat
ggattggggatgaaattatcagttgatgaagatttagttattcctgataaggataaaact
ttagcagagggagctttagtgccatggtctaattcaaaatactatactgccatgcttgag
caagcatgtatggctttaaaaatacctgtggacaagccatataaaaaattaactaaaaag
caaaaagatctaattttaaatggatctaaagggaaaaaaatcaaatttcatcttgaaggt
gactttggtgtaaatgatactgttcaagaatttgaaggaattttaaataatatcaatcgt
cgttatcatcatccaatgtcaaaatttatgcgtgatgcaatgggtaagtatatgactgaa
cttacttgttcaacttgtcacggtaagcgattaaatgaaaaggcattagcagtaaaagta
aatggcaaagatattgctgaagcttctgatctgtcaatttctaagtcattgaactttttt
aattcagtaaaattaagtgaacaagaaaagatgattgctaaaccaattttgaaagaggta
cgtgatagattaactttcttaaagaatgttggtttagactatctgactttatctcgttct
gctggaactttatccggtggagaagcacaaagaattagactagcaacccaaattggctct
aatttatctggcgttatgtatattttggatgagccatcaattggtcttcatcagcgagat
aatgatcgacttatttcttcgctgaaaaagatgcgggatcttggtaattctttaattgta
gtcgaacatgacgatgaaacgatgaaacaggccgattacttagttgatatgggaccagga
gcaggtgtatatggcggaaaagtaatggctgctggtacaccagaagaagtgatgaagaat
cctaaatctttaactggacaatatttatcaggtaaaaagatcgttcctgtaccgttagag
agaagaaagggtaatggtaaaaaaattactgttactggtgctgctgaaaataacttgaag
gatatttcagtagatttccctctagggaaatttgttgtagtaaccggcgtttcaggttct
ggaaaatcaactcttgtaaacttgattctgaagcgtgctttagcacaaaaattaaataat
aattcagctaaaccaggaaagtataagtcaattaagggatataaaaacatcgaaaaaatt
atcgatattgatcaaagccctattgggcggacaccacgtagtaatcctgcaacttatact
agtgtatttgatgatattcgagctttatttgcacaaactaatgaagcaaaaatgcgtgga
tatactaaagcgagattttcttttaatgttaagggcggtagatgcgaagcttgtcatggt
gatggaattattaaaatcgaaatgaatttcttacctgatgtttatgtaccttgtgaagtt
tgtcatgggacaagatacaattcagaaactcttgaagtaacttaccgtgaaaaaaatatc
tcgcaagttttgaatatgacaattaatgaagcttgcaaattttttgaaaatattcctaaa
attcatcgtaagctacaaacaatcgttgatgttggtttgggttatgtaaaacttgggcag
tcagccacaactttatctggtggggaagcacagagaatgaaattagcttctgaattacag
aagctttccacgggtaataatttctacattttagatgaaccaacaacgggtttacatact
gatgacattaagcggttattagaagtattgcagcgcttagtcgatgagggaaatactgtt
ttaattattgaacataacttagatgttattaaaaacgctgattggttgattgatttaggc
cctgaaggtggagatggcggtggtcaagttgtggctactggtactccagaagaagttgct
gaagttaaagaaagttatacgggacaatacttaaaaccagttctcaagcgagatattaag
ttaactaaaaagttaatgaatagcaaagatgagcaggaataa
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