Lactobacillus paragasseri: LpgJCM5343_13350
Help
Entry
LpgJCM5343_13350 CDS
T05840
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lpw
Lactobacillus paragasseri
Pathway
lpw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LpgJCM5343_13350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpw03019
]
LpgJCM5343_13350
Messenger RNA biogenesis [BR:
lpw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LpgJCM5343_13350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
COG5_N
Motif
Other DBs
NCBI-ProteinID:
BBD48982
LinkDB
All DBs
Position
complement(1375972..1377594)
Genome browser
AA seq
540 aa
AA seq
DB search
MINTILVPVAVAIVSVLVGGCAGYSLRKNKWETQAQNAAHDAKHILADAESKAKAVEADL
ASQKEAMRKAAADAKKEKILEAQEEIHHYRERVDNELNERRQEVSRQENRLLQREDAIDH
KDSLLDQKDSQLTQKENQIKKLQAQVLEKEKRADQLVTEREQKLYEVAELSQEDAKKIVL
DKLSDQLVKERAEMIEESNQLAKAKADHFARKVIVDAIQSSAADTVSEKTVSVVNLPNDD
MKGRIIGREGRNIRSFEALTGVDVIIDDTPDVVVLSGFDPIRREIAKRALERLIKDGRIH
PARIEEMVDRARKEVNDDIYEAGESALMELGIHKMHPELVKILGRLKYRTSYGQNVLSHS
IEVGKLTGVMAAELGLDEKIAVRAGLLHDIGKSIDHEIEGSHVEIGVELARKYHEPDLVV
NAIAAHHDDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLEQLETIAKGHIGVKQ
AYAIQAGREIRVMVEPDKISDARTTILAHDIRNQIEQDMEYPGNIKVTVIREKRAVAIAK
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgataaatacaattttagttcctgttgctgtcgctattgtttctgtcttagttggaggt
tgtgcgggttatagtcttcgtaagaataaatgggagactcaagctcagaatgcagcccat
gatgcaaaacacatcttggcagatgcagaaagtaaggctaaagcggtagaggctgatctt
gcttctcaaaaagaagcgatgagaaaagctgcagctgatgccaaaaaagaaaagatcttg
gaagcacaagaagaaattcatcattatcgtgaaagagtagataatgaattgaatgagcgg
cgacaagaagtttctagacaagaaaatcgcttactgcaacgtgaagatgctattgatcat
aaagatagtttgctggatcaaaaagattcacaactcacacaaaaagaaaaccaaattaaa
aaattgcaggctcaagttttagaaaaagaaaaaagagctgatcaattagtgaccgagcga
gagcaaaagctctatgaagttgcagagttaagtcaagaagatgctaaaaagatcgtttta
gacaagctttccgaccaactggttaaagagagagcagaaatgattgaagaaagtaatcaa
cttgctaaagcaaaagcggatcattttgctcgtaaagtaattgtcgatgcaattcaaagt
agtgcagctgatacagtttcggaaaagactgtttcagtagttaatttaccaaatgatgat
atgaaaggtcgtatcattggccgtgaaggtagaaatattcgctcatttgaggctttaact
ggtgtagatgtgattattgatgatacaccggatgtagtagtcctaagtggttttgatcca
attagacgtgaaattgcaaaaagagcattagagcgtttgattaaggatggtcgaattcac
ccagcacggattgaagaaatggttgatcgagctcgtaaagaagtgaatgatgacatttac
gaagctggagagagtgctttaatggaacttggaattcataagatgcatccagaattagta
aaaattttgggacgcttaaagtatcgtacgtcttatggacaaaatgttttgtctcattct
attgaagtaggcaaattaactggtgtgatggctgctgaacttggtttagacgaaaaaata
gcggtacgcgcaggattattacacgatattgggaagtcaattgatcatgaaattgaaggt
tcccatgtagaaattggtgttgaacttgcacggaaatatcatgaaccagatttggttgtg
aatgcgattgctgctcaccacgatgatgttcctaaattatcatttattgcagaactagtt
gtggccgctgatacaatttcttcagctcgtccgggtgctagaagcgaatctctagagaat
tatattcgtcgtttagagcaactggaaacaatagctaaaggacatattggcgtaaaacaa
gcatatgcaattcaagcaggtcgtgagataagagtgatggtcgaacctgataaaatttca
gatgctcgaactactattcttgctcatgatattagaaaccaaattgaacaagatatggaa
tatcctggtaacattaaagttacagttattcgagaaaaacgtgctgttgcaatagcaaaa
taa
DBGET
integrated database retrieval system
