Lactobacillus paragasseri: LpgJCM5343_15010
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Entry
LpgJCM5343_15010 CDS
T05840
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lpw
Lactobacillus paragasseri
Pathway
lpw03420
Nucleotide excision repair
lpw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LpgJCM5343_15010 (pcrA)
03430 Mismatch repair
LpgJCM5343_15010 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpw03400
]
LpgJCM5343_15010 (pcrA)
Enzymes [BR:
lpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LpgJCM5343_15010 (pcrA)
DNA repair and recombination proteins [BR:
lpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LpgJCM5343_15010 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
LpgJCM5343_15010 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PcrA_UvrD_tudor
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
ResIII
DEAD
YMR265C_C
Motif
Other DBs
NCBI-ProteinID:
BBD49148
LinkDB
All DBs
Position
complement(1546601..1548874)
Genome browser
AA seq
757 aa
AA seq
DB search
MFKLSGKREAMSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEK
GVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMSTFHALCVRILRRDAEKIGYSNN
FSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNGKNDLLTPKDFKEQAASPFEKV
TAQVYAEYQHRLKRDQIMDFDDLIMQTLVLFKKDKETLHYYQNKFRYILVDEYQDTNEAQ
YQLCVALAAQYKNICVVGDADQSIYGWRGANMENILNFEHDYQDDEVNTIKLEQNYRSTG
HILDAANSVIKNNQNRKPKKLWTDKGDGDKINYYRAQSGNDEALFIVSKINEEIKGHHRD
YKDFAVLYRTNAQSRNVEEALVKSNIPYRIVGGHKFYDRKEIKDILAYLKVVANPADSMS
FNRIINVPKRGLGPTTMAKFNGFANDNDFTVEETFKNLSLAPITGRPAKTLATFGTALKD
AIEYSKTHSVTGLTEKLLADFGYKEALENEHTIEADTRLENLNEFLTVTKRFDDNYEPED
EDSTALGDFLSEISLLSDQDDLENQDNQVALMTLHAAKGLEFPVVFLVGMEEGLFPLSRA
ASDPSELEEERRLAYVGITRAEKKLYITNAFSRTMYGRPQNNQPSRFIDEIEDKDLEFVN
PVQSNSSMSIPFAKSSERATSQVYRPKTRIETAKKASGAVGADKKTWNVGDQVSHKAWGK
GVVVKVNGSGEDMELDIAFASQGVKRLLAAFAPIKKI
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
gtgtttaagttatcaggaaagagagaagcaatgagcgaagaaacaattcttgcaggatta
aatccgcagcagaaaaaagctgtgcagtgtactgaaggtccacttttagtagttgctgga
gctggtagtggaaaaacatcagttttaacacgtcgaattgcctatttaattgaagaaaag
ggcgttgcgccatggaatgttttagccattacttttactaataaggctgcaactgaaatg
aaagaacgtgtccaaaagcttttagggccagctgctgatagtgtttggatgtcaactttt
cacgctttatgtgtgagaatcttacgccgagatgcagaaaaaatcggctattctaataac
ttttcaattgctgattcagcagaacagttaactttaattaagcgaattgaaaaggatctt
aatattaatcctaagatgtatgatcctaaggctattttaggtgctatttctaacggcaaa
aatgacttacttacgccaaaagatttcaaagaacaagcagctagtccttttgaaaaagta
acagcgcaagtttatgcagaatatcagcaccgcttaaagcgagatcaaattatggacttt
gatgatttgattatgcaaacgctagtcttgtttaagaaagataaagaaacgcttcattat
taccaaaataagttccgctatattttagttgacgagtatcaggatacaaacgaagctcaa
tatcaactttgtgtggcactagctgctcaatataaaaatatttgcgttgttggggatgca
gatcagtcgatctacggttggcgcggtgctaacatggaaaatattcttaattttgagcat
gactatcaagatgatgaagttaatacgattaaacttgaacaaaattatcgttcaactggt
catatcttagatgctgctaattcagttattaagaataatcaaaatcgtaaacctaagaaa
ctttggactgataagggcgacggcgataagatcaactattatcgtgctcaaagtggtaac
gatgaggcactctttattgtttcaaagatcaacgaagaaataaaagggcatcacagagac
tacaaggattttgcagttctttaccgtacaaatgcccaatctcgtaacgtcgaagaagct
ttagttaaatcaaacattccttaccgaattgttggcggtcataaattctatgatcgaaaa
gaaattaaagatattttggcctacttgaaggttgtagcaaaccctgctgattcgatgagt
tttaatcgaattatcaatgtaccaaagcggggattaggtccaacaacgatggctaagttt
aatggctttgctaatgacaatgatttcacagttgaagaaacatttaagaacttaagctta
gcaccaattacaggacgtccagctaagactttagcaacttttgggactgccctaaaagat
gcaattgagtacagtaagacgcatagcgtaactggtttaactgaaaaattattagctgac
tttggctataaagaagccctagaaaatgaacatacaattgaagctgataccagattagaa
aacttgaacgaattcttaactgttactaagcgttttgatgataattatgagccagaagat
gaagattcgactgccttaggtgattttctttcagaaatttcactcttaagcgatcaagat
gatttagaaaatcaagataatcaagtagctttaatgacgcttcatgcagctaaaggatta
gagtttccagttgtctttttagttggcatggaagaaggtctattcccgctttcaagagcg
gcaagcgatccaagtgaacttgaagaagagcgtcgtttagcctatgtaggtattacgcgt
gctgaaaagaaactttatatcacgaatgccttttctagaacaatgtatggtcgtccgcaa
aataatcagccatctcgttttattgatgaaattgaagataaggatctagaatttgttaat
ccagttcaatctaattcttcaatgtcgattccttttgctaaaagtagtgaacgtgcaact
tctcaagtttatcgtcccaaaactagaattgaaacagctaagaaggctagtggtgcagtt
ggcgcagataagaagacctggaatgttggcgatcaagtttctcataaggcttggggaaag
ggtgttgtcgtcaaagttaacggcagcggagaagatatggaattagatattgcttttgct
agtcaaggagtaaagcgccttttagctgcctttgcaccaattaaaaagatataa
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