Lactiplantibacillus paraplantarum: ASU28_01065
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Entry
ASU28_01065 CDS
T04156
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpx
Lactiplantibacillus paraplantarum
Pathway
lpx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ASU28_01065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpx03021
]
ASU28_01065
03400 DNA repair and recombination proteins [BR:
lpx03400
]
ASU28_01065
Enzymes [BR:
lpx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ASU28_01065
Transcription machinery [BR:
lpx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ASU28_01065
DNA repair and recombination proteins [BR:
lpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ASU28_01065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ALO03052
UniProt:
A0A098R538
LinkDB
All DBs
Position
complement(228350..231991)
Genome browser
AA seq
1213 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIESGNTPLEKKQLLSEREYREKKAQYGNEFEAAMGAEAIKRLLN
NVDLEKEARDLKETLKDASGQKRTRAVRRLDIIEAFVTSGNEPAWMVMDAIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPRQ
MALELFKPFIMKELVKRELASNIKNAKRKIEHADDDVWGVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
APKDGKPVVTPSQDMVIGNYYLTTEEIGREGEGMIFKDLNEAQKAYQSGYVHLHSRVGVQ
VSSMPDKPFTDDQKQAVLVTTVGKAIFNNILPGKFPYLNEPTNDNLIAGTPDKYFLKPGE
DIRQFLDAQEIIPPFKKGFLADIIAEVYKQYHVTATSLLLDRMKDLGYNISTKSGLTVGV
ADITGLKEKPEIIAEAHKQVNTISKQFRRGLITDDERYERVIGVWNDAKDQIQQKLIESF
NADNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGKIMELPILSNFREGLSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLRIHAIMEGNEVIEPLY
DRILGRYTMKTVFDPETHDEIVGNNVLIDEDLAHKIVDAGVTEVTIRSAFTCNTKHGVCE
HCYGRNMATGDEVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGDDITQGLPRVQEIV
ESRNPKGRAEITEVTGTVELIEENPAERTKEVTVKGETDTRTYTLPLTARMAVSEGDFIH
RGAALNIGSIDPKQLIQVRDVLSTENYLLREVQKVYRMQGVEIGDKHVEIMIRQMLRKVR
VMDPGDTDVLPGTLMDIADFKDENYKTLIAGGIPATSRPVILGITKAALETNSFLSAASF
QETTRVLTDAAIRGKNDPLIGLKENVIIGKIIPAGTGMPVYRHIKPKEVGNVADGVYSIS
DLEKQMQEQDASK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtcaacaagtttgaaagcatgcaaatcggtctggcatccccagacaagatt
cgcagctggtcatatggcgaagtcaaaaagccagaaaccattaactaccggacattgaaa
cctgaaaaagacggtctgtttgacgaacggatttttggtcctactaaggattgggaatgt
gcttgtggtaaatacaaacggattcgttataagggtattgtctgtgaccgttgtggggtc
gaagtgactcgtagtaaagtccgtcgtgaacggatgggtcatatcgaacttgccgcacca
gttactcacatctggtactttaagggaattcctagccgaatgggcttagtcttagacatg
agtcctcgggcacttgaagaaatcatttacttcgcttcatatgtcgttatcgaatctggt
aacacgccacttgaaaagaagcaattactttctgaacgtgaataccgtgagaagaaagcc
caatatggtaatgaattcgaagctgccatgggtgctgaagccatcaaacggttattaaat
aacgtggatcttgaaaaagaagctcgtgatttaaaggaaactttgaaggatgcttctggt
cagaaacggacccgggccgttcgacggcttgatatcattgaagctttcgtgacatctggt
aacgaaccagcttggatggtaatggacgcaattccggttattccaccggacttacggcca
atggttcaattggaaggtggtcgttttgccacctctgacttgaacgacttgtaccggcgg
gttatcaaccgtaacaaccggttgaagcgcttgttggacttaaatgcacctgggattatc
gtgcaaaatgaaaagcggatgttacaagaagccgttgatgcgttgatcgataacggtcgt
cgtggccgtcccgttgctggtcctggtaaccgaccattgaagtctctttcacacatgctg
aaagggaagcaaggacggttccgtcaaaacttacttggtaagcgggtcgactactctggt
cgttcggttatcgatgttgggcctttcttgaagatgaaccaaatgggcttgccacgtcaa
atggcgttggaattgttcaaaccattcatcatgaaagaattggttaaacgtgaattagct
tctaacattaagaacgctaagcggaagatcgaacatgccgatgacgatgtctggggtgtg
ttggaagacgtgatcaaggaacatcccgttctcttgaaccgcgcccctacgcttcaccgt
ttggggattcaagcctttgaacccgtcttagttagtggtaaagcgatgcggctccatcca
ttggcttgtgaagcttacaacgccgatttcgatggggaccaaatggccattcacgttcct
ctttcagacgaagcccaagctgaagcacggctcttaatgttagctgcccatcatatcttg
gcacctaaggacgggaaacccgttgttacgccatctcaagatatggttatcggtaactac
tacttgacgactgaagaaatcggtcgtgaaggtgaaggcatgatcttcaaagacttgaac
gaagctcaaaaggcttaccaatcaggttatgtacacttgcatagccgggtgggggttcag
gtctcatcaatgcctgacaagccatttacggacgatcagaagcaagccgtcttagtgacg
acggttggtaaggcaatctttaacaatattttgcctggtaagttcccttacttgaacgaa
ccaaccaacgataacttgattgctggtacgccggacaagtacttcttgaagccaggtgaa
gatattcgtcaattcttggatgcgcaggaaattattccaccattcaagaaaggcttcttg
gccgacattattgccgaagtttacaagcaatatcacgtgacggcaacgtcactcttgctt
gaccgtatgaaggacttaggttacaacatttcaaccaagtctggtttgacggttggggtt
gccgatattactggtttgaaagaaaaaccagaaattatcgctgaagctcataagcaagtt
aatacgatttcaaaacagttccgtcgtggtttaattactgatgacgaacgttatgaacgg
gtcattggtgtctggaacgacgctaaggaccaaatccaacaaaaactgattgaaagtttc
aacgcggataacccaatctttatgatgagtgattccggtgcgcgtggtaacatttcaaac
tttactcagttagctgggatgcgtggtttgatggctgcccctaacggtaagatcatggaa
ttaccaatcctttcaaacttccgtgaaggtttgtctgtcttggaaatgttcatttcaacc
catggtgctcgtaaagggatgaccgatacggcgcttaagactgccaactcaggttacctg
actcggcgtctggttgatgtggcccaagatgttatcgttcgtgaaaaggattgtggtact
gaccgtggcttgcggattcacgcaatcatggaaggtaacgaagtcatcgaaccgttgtat
gaccggatcttaggtcgttacacgatgaagactgtctttgatcctgaaacgcatgatgaa
attgttggtaacaacgtcttgatcgacgaagacttagctcataaaatcgttgatgctggt
gtgacggaagttacgatccgttctgcatttacttgcaacactaagcatggggtttgtgaa
cattgctacggccgtaacatggcgactggtgatgaagttgaagttggtgaagctgttggg
actgttgctgcacagtctatcggtgaacctggtacccagttaaccatgcggaacttccat
accggtggtgttgccggggacgatattacccaagggttgcctcgtgtgcaagaaattgtg
gaatctcggaatcctaaagggcgtgccgaaattaccgaagttactggtacggttgaatta
attgaagaaaatccagcggaacggacgaaggaagttacggttaagggtgaaaccgatacc
cggacttacacgttgccgttaacagcacggatggcggttagtgaaggcgactttattcac
cgtggtgctgcgttgaacattgggtcaattgatcctaaacaactaattcaagtacgggac
gtcttatcaactgaaaactacttgctccgtgaagttcaaaaggtttatcggatgcaaggg
gttgaaattggcgataagcacgttgaaatcatgattcggcaaatgttacgtaaggttcgg
gtcatggatccgggcgataccgacgtcttgcctgggacgttaatggatattgcagacttc
aaggacgagaactacaagaccttgattgccggtggtattcctgcaacgtcacggccagtt
attcttgggattaccaaagctgcgcttgaaacgaacagtttcttgtcagctgcttcattc
caggaaacgactcgggtcttaaccgatgctgctattcgtggtaagaacgatccactgatc
gggcttaaagaaaatgttatcattggtaagatcattcctgctgggactggtatgccggtt
taccgtcatatcaaaccaaaggaagttggcaacgtggctgatggggtttactcaatcagc
gaccttgaaaaacaaatgcaagaacaagatgctagcaagtaa
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