Lactiplantibacillus paraplantarum: ASU28_01315
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Entry
ASU28_01315 CDS
T04156
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpx
Lactiplantibacillus paraplantarum
Pathway
lpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASU28_01315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpx03019
]
ASU28_01315
03400 DNA repair and recombination proteins [BR:
lpx03400
]
ASU28_01315
Enzymes [BR:
lpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASU28_01315
Messenger RNA biogenesis [BR:
lpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASU28_01315
DNA repair and recombination proteins [BR:
lpx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ASU28_01315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALO03093
LinkDB
All DBs
Position
complement(280344..282152)
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AA seq
602 aa
AA seq
DB search
MIDLAAAQQVLKTTFGYDEFRPGQKAVIEQVLAGENTLAIMPTGGGKSLCYQIPALLFQG
LTVVVSPLISLMKDQVDALNDNGIAATFINSSLDFQAINERLQELRAGDYTLLYVAPERL
DSDYFIQALGRLPIQLLAIDEAHCISQWGHDFRPSYLALSTAIEQLPTHPQVLALTATAT
EQVAEDICGRLAIDPQHEVNTGFARDNLDLTVVKDQDTDRYILDYLKVNHGEAGIIYAST
RKEVMRLTSLLQKHDIKATPYHAGLDDMVRRQNQEDFLYDRVDVMVATNAFGMGIDKSNV
RFVIHAQVPGTLEAYYQEAGRAGRDGLPSEAILIFRPSDIQLQHFFIDESEMDTEHRHLA
YQKLQVMTRYANTQGCLQQFILKYFGEASAPCGRCSNCTDQRESQDITTAAQQVLSCVVR
LHSRFGKGVVAQVLTGANNQRVRESNLNTLSTYGLMSGQRQKSVVELIDFLTASGYLQSV
GGQYPTLTVTASGVAVLKGTTTVHRKTAQKVQQTVPENSALFEQLRTLRRQLAEEQGVPP
FVIFSDKTLHSMCDLMPEDDATFLKVKGVGASKLEKYGETFMATIRAAAHAEATTGVDDG
AE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgattgacttagcggcggcacagcaagtattaaaaaccacgtttggatatgatgagttc
cgaccggggcaaaaagcagtgatcgaacaagtgttagccggtgaaaacaccctggcaatc
atgcctactggtggtggtaaatcattatgttatcaaattccagcgttactttttcagggc
ctgaccgtcgttgtctcaccactgatttctttaatgaaagatcaagtggatgcattaaat
gataacggaattgcagcgacctttattaatagttcactggattttcaagcaattaacgag
cggctccaagaattacgggcgggtgattataccttgctatacgtagcgccagagcggtta
gattcagattacttcatccaagcattgggacgattgccaattcaactcttggctattgat
gaagcccactgtatttcgcagtggggacatgattttcggcctagttatttggcattgagt
acggcgattgagcaattgccgactcatccgcaagtcttagccttgaccgctacggcgact
gaacaagttgctgaagatatttgtggtcggctagcaattgatccacagcatgaagtcaat
actggctttgcacgggataacttagacttgacggtggtcaaggatcaagatacggatcga
tatattttagattatttgaaggtcaatcatggcgaggcggggattatttatgcgagcacc
cgtaaagaagtgatgcgtttgaccagcctgttgcaaaagcatgatattaaggcaacgcca
tatcacgccggacttgatgacatggttcgccgtcaaaatcaagaggactttttgtatgat
cgggtcgatgtgatggtggcaactaacgcttttgggatgggaattgataagagcaacgtg
cggtttgtaattcatgcgcaggtcccaggtaccttagaagcatattaccaggaagccggt
cgggctggccgggatgggttgccgagtgaagcgattttgatttttcggcctagtgatatt
cagctccaacatttctttattgatgagtctgagatggatacggaacatcggcacttagcg
tatcaaaagttacaagtaatgacgcggtatgcgaatacgcaaggctgtttgcaacagttt
attttgaaatactttggtgaagcatctgcgccgtgtggtcggtgtagtaattgtactgat
caacgggaatcacaggatattaccacggcggcacagcaagtactgtcgtgtgttgtgcga
ctgcattcccggtttggtaagggagtagtggcccaggtcttgacgggggctaataatcag
cgggttcgtgaatcaaatctgaataccttatcaacgtacgggttaatgtccggtcagcgc
caaaagagcgtggtagaattgattgattttttgactgcgagcggttatttgcaatctgta
gggggacaatacccaacactcacggtaacggccagcggagtagccgtacttaaggggacg
acgacggtgcaccgcaagacggcccaaaaagtgcaacaaacggttcctgaaaatagtgcg
ctctttgaacagttacggacacttcggcgtcaattggccgaagagcagggcgtgccacca
ttcgtcatcttttccgataagacgttgcattcgatgtgtgatctgatgccagaagatgac
gcgaccttcttgaaagtgaaaggggtcggagctagcaagcttgaaaagtatggtgagacc
tttatggcaacgattcgagcagcagcacacgcggaagcgaccactggtgttgacgacggt
gctgaataa
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