Lactiplantibacillus paraplantarum: ASU28_02375
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Entry
ASU28_02375 CDS
T04156
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpx
Lactiplantibacillus paraplantarum
Pathway
lpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASU28_02375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpx03019
]
ASU28_02375
03009 Ribosome biogenesis [BR:
lpx03009
]
ASU28_02375
Enzymes [BR:
lpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ASU28_02375
Messenger RNA biogenesis [BR:
lpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASU28_02375
Ribosome biogenesis [BR:
lpx03009
]
Prokaryotic type
rRNA helicases
ASU28_02375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
DUF6892
Motif
Other DBs
NCBI-ProteinID:
ALO03294
LinkDB
All DBs
Position
509239..510834
Genome browser
AA seq
531 aa
AA seq
DB search
MKFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL
QRLDFDNHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNP
QVIVGTPGRLLDHIRRGTVKLDHVQMLVLDEADEMLNMGFLEDIESIIKQVPDERQTMLF
SATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPE
LTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAA
RGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVIEKLTKK
RMLPLKPPTESEAFAGQLAAAEANVDSLVAKTSTEKYADQAAELLEKYDATDLVAALLND
LTKDDSSAVPVKITPERPLPRHKGGGGNNRRGGGYRGGNRNRNNSHGNGRGGYSHNGRSR
DRDRDRNGGRGDRKSNGYKGRSRDDNRSSNRNHDEGRKQSSKRSYTIRTND
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttacagaactaggcttatccgatagcctacttaaagcagttaatcgggccggt
tacgaagaagcgaccccgattcaggccgaaaccattccaatggttctagaaggcaaagat
gtgattggtcaagcacaaaccggtactgggaagaccgccgcgtttgcattaccaatctta
caacgtttggattttgacaatcataatattcaagcattagttgtttcaccaacgcgtgaa
ttagcgatccaaactcaggaagaaatcttccgtttgggtaaagacgaacgggctaaagtc
caagtcgtttacggtggtgctgatattcggcgccaaattagaaatctgaagcaaaatcct
caagttatcgtagggacacctggtcgactactcgatcacattcgtcgtggcacggttaaa
ttagaccacgtccagatgctagttcttgacgaagctgacgaaatgttaaacatgggtttc
ttagaagacatcgaatcaattatcaaacaagtgccggatgaacgccaaactatgttgttc
tccgcaacgatgccacccgaaatcaaacgaattggtgtgcagttcatgaaggaaccgcac
cacgttaagattaaatcaaaagaaatgactgccgatacggttgatcaatattacgttaag
gcaaaagaatttgaaaagttcgatattatgacacggttattcgatgttcaggcacctgaa
ctcaccatcgtgtttggtcggacaaagcgccgagttgacgaattatctaagggacttgaa
gcgcgtggctataatgctgccggtattcatggtgacctgagccaacaacgtcggacgcaa
attatgcgtcagttcaaagctggtaagttggatatcttagttgcaaccgatgtggctgcc
cggggacttgatgtttctggtgtgactcatgtttacaattacgatattccacaggatccg
gatagttatgttcaccggattggtcgtactggccgtgccgggcacaaaggggtttcctta
acttttgtgacaccgaacgaaatggaatatttgcgggtcattgaaaagctgactaagaag
cggatgttaccattgaagccaccaactgaatctgaagcttttgctggccaattagctgcc
gcagaagccaatgttgattcattagttgctaagacttctaccgaaaagtatgctgaccaa
gctgctgaactcttagaaaagtacgacgcaactgacttggttgccgccttgttgaatgat
ttaactaaggacgactcgtcagctgtacccgttaagatcacgccagaacgcccattacct
cgtcacaagggtggcggcggtaataaccggcgtggtggtggttaccgtggtggtaatcgc
aaccgtaataacagccatggtaatggccgtggcggttattcacacaatggtcgtagtcgt
gaccgcgatcgtgatcgtaacggtggtcgtggtgaccgtaagagcaatggttataagggt
cgcagtcgcgatgataaccggagcagcaatcgtaaccatgatgaaggtcgtaagcaaagc
agtaagcggagctacacgattcggaccaacgattaa
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