Luteibacter pinisoli: FIV34_05030
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Entry
FIV34_05030 CDS
T06035
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpy
Luteibacter pinisoli
Pathway
lpy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIV34_05030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpy03021
]
FIV34_05030 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpy03400
]
FIV34_05030 (rpoC)
Enzymes [BR:
lpy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIV34_05030 (rpoC)
Transcription machinery [BR:
lpy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIV34_05030 (rpoC)
DNA repair and recombination proteins [BR:
lpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIV34_05030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QDE38606
UniProt:
A0A4Y5Z165
LinkDB
All DBs
Position
1111492..1115706
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVIDPGLTALERGQLLSEDQYLEATEEHGDEFDARM
GAEAVYELLKSLDLPGEVIRLKEEIASTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREESQVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA
RALMMSSNNVLSPANGEPIIVPSQDVVLGLYYMTRELVNAKGSGMVFANIGEVRRAYDNR
AVELHAKVKVRVRVFELAEDGTRSASTQIVDTTVGRALLAEIIPEGLPFALVNVELTKKN
ISRLINQSYRLLGLKESVVFADKLMYTGFRFATRAGISIGIDDMKIPGEKKAILEEAEKE
VVEIQEQYQSGLVTAGERYNKVVDIWSRTNELVAKAMIDGIGTEKVTDLEGKVVNQKSMN
SLYIMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITHHDCGTEDGVMMAPIVEGGDVVEPLRERVL
GRVVVEDVYAPGEGDEAIVTRDTLLDEGLVDKLDKAGVQLIKVRSPITCRASHGVCALCY
GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVRTTGSLK
FNNLKSVEHSAGHLVAVSRSGEVSVIDVNGRERERYKVPYGATIAVKDGDPVKAGQTVAN
WDPHTHPIVTEVAGVVRFIDFIDGVTVQSQTDDLTGLESAVVTDPKRRGTQAKDLRPIVR
LEDSKGRELKLPGTDIAAQYFLPAGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGGLP
RVADLFEARKPKEPAILAERSGIVSFGKDTKGKQRLIIKDVDGNEHEELIPKWRQVIVFE
GEHVEKGETVVDGEPNPHDILRLLGVEPLASYLVKEIQDVYRLQGVKINDKHIEAIIRQM
LRKVEITEAGDSTYLRGEQVERVRMNEENERAEKRGERPASFESVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHASRRSQSGLTDSDL
QTLQGSGSAVSFEEAPAGSNDSAE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctgttcaaccagcagcgacagacgctggacttcgacgcgatc
aagatcgccctggcttcgccggagctgatccgctcgtggtcgtacggcgaagtgaagaag
ccggaaacgatcaactaccgcacgttcaagcctgagcgtgacggtctgttctgcgcggcc
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcat
cgtggcgtcgtgtgcgagaagtgcggtaccgaggtcaccctggccaaggtccgtcgcgag
cgcatgggccacatcgagctggccagcccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctcatgctggacatgacgctgcgtgacatcgagcgcatcctgtac
ttcgaagccttcgtcgtgatcgatccgggcctgaccgcgcttgagcgcggccagctgctc
agcgaagaccagtacctggaagccaccgaagagcacggcgacgaattcgatgcccgcatg
ggtgccgaggccgtctacgagctgctgaagagcctcgacctgccgggcgaagtcatccgc
ctcaaggaagagatcgcctcgaccaattcggaaaccaagctcaagcgcctcaccaagcgc
gtcaagctgatcgaagcgttcctggaatccggcaacaagccggagtggatggtgctgacc
gtgcttccggtgctcccgccggatctgcgtccgctcgtcccgctggacggtggccgtttc
gccacgtccgacctgaacgacctgtaccgccgcgtcatcaaccgtaacaaccgcctgaag
cgcctgctcgaactcgctgcgccggacatcatcgtccgcaacgagaagcgcatgctccag
gaatcggtcgatgcgctgctcgacaacggccgccgcggccgtgccatcaccggcacgaac
aagcgcgcgctgaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacc
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgcttgagctgttcaagcccttc
atcttcgccaagctccaggcgcgtggcgaagccaccaccatcaaggcggccaagaagctc
gtcgagcgcgaagagtcgcaggtgtgggacatcctggaagaggtgatccgcgaacatccg
gtcatgctcaaccgcgcgcccacgctgcatcgtctcggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcatccgctcgtctgtacggcattcaacgccgac
ttcgacggtgaccagatggctgtccacgtgccgctgtcgatcgaagcgcagctcgaagcc
cgcgccctgatgatgtcgtcgaacaacgtgctgtcgccggcgaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgacccgcgagctggttaacgcc
aagggctcgggcatggtgttcgccaacatcggtgaagtgcgccgcgcgtacgacaaccgt
gccgtcgaactgcacgccaaggtcaaggtccgcgtccgcgtgttcgaactcgcggaagac
ggtacccgttcggcaagcacccagatcgtcgatacgaccgtgggtcgcgcgctgctggcc
gagatcatcccggaaggcctcccgttcgccctggtgaacgtcgagctgaccaagaagaac
atctcgcgcctgatcaaccagagctaccgtctgctcggcctgaaggaatcggtcgtgttc
gcggataagctgatgtacaccggcttccgttttgcgacgcgcgccggcatctccatcggc
atcgacgacatgaagatcccgggcgagaagaaggcgatcctcgaggaagccgagaaggaa
gtcgtcgagatccaggagcagtaccagtcgggcctcgtcaccgccggtgagcgttacaac
aaggtcgtcgacatctggtcgcgcacgaacgaactggtggcgaaggccatgatcgacggt
atcggtaccgagaaggtcaccgatctcgaaggcaaggtcgtcaaccagaagtcgatgaac
tcgctgtacatcatggccgactccggcgcgcgtggtagcgcggcgcagattcgccagctg
gcaggtatgcgtggcctgatggcccgtccggatggctcgatcatcgagacgccgatcaag
gcgaacttccgtgaaggcctgaacgtcctgcagtacttcaactccacccacggtgctcgt
aagggcctggcggatacggcgctgaagaccgcgaactcgggttacctgacccgtcgtctc
gtcgacgtggcccaggacgtggtgattacccaccacgactgcggcaccgaagacggcgtg
atgatggcgccgatcgtggaaggcggtgacgtggtcgagccgctgcgcgagcgcgtgctg
ggccgcgtggtggtcgaagacgtctacgccccgggcgaaggcgacgaagcgatcgtcacc
cgcgatacgctgcttgacgaaggcctggtcgacaagctcgacaaggccggcgtgcagctg
atcaaggtgcgttcgccgatcacctgccgtgccagccatggcgtttgcgcgctgtgctac
ggccgcgacctggcccgtggtcacctcgtgaacatgggtgaggccgtgggcgtcgtcgcc
gcacagtccatcggtgagccgggtacccagctgacgatgcgtacgttccatatcggtggt
gcggcttcccgtgccgccgccgtggataacgtcaccgtccgcaccacgggttcgctgaag
ttcaacaacctgaagtcggtcgagcattcggcgggccacctggtggccgtgtcgcgttcg
ggcgaagtcagcgtcatcgacgtgaacggccgcgagcgcgagcgctacaaggtgccttac
ggtgccaccatcgcagtgaaggacggcgacccggtcaaggccggccagaccgtcgcgaac
tgggatccgcatacccacccgatcgtcacggaagtggctggtgtggtccgcttcatcgac
ttcatcgatggcgtgaccgtgcagtcgcagacggacgacctgaccggcctcgagtcggcg
gtggtgaccgatccgaagcgtcgcggtacgcaggccaaggatctgcgcccgatcgtccgc
ctggaagacagcaagggccgtgagctcaagctgccgggcaccgacatcgcggctcagtac
ttcctgccggccggcgccatcgtgtcgatccagaacggcgccgaagtgggcgtgggtgac
gtcgtcgcccgtatcccgcaggaaacgtcgaagacccgtgacatcaccggtggtctgccc
cgcgtggccgatctgttcgaagcgcgcaagcccaaggagccggcgatccttgccgagcgc
tcgggtatcgtcagcttcggcaaggacaccaagggcaagcagcgtctcatcatcaaggac
gtggacggcaacgagcacgaagagctgattccgaagtggcgtcaggtcatcgtcttcgaa
ggcgagcacgtggagaagggcgaaaccgtcgtcgacggcgagccgaatccgcatgacatc
ctgcgcctgctgggtgtcgagccgctggccagctacctggtgaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaagcgatcattcgccagatg
ctccgcaaggtcgagatcaccgaggcaggggacagcacgtacctgcgcggtgagcaggtc
gagcgcgtccgcatgaacgaggaaaacgagcgcgctgagaagcgtggcgagcgtcctgcc
tcgttcgagtcggtcctgctgggcatcaccaaggcctcgctggccaccgagtcgttcatc
tcggcggcctcgttccaggagaccacccgcgtcctcaccgaggcagccgtccgcggcacc
cgtgatacgttgcgtggcctcaaggaaaatgttattgttgggcggctaatccctgcgggt
acgggtctggcttaccacgcttcgcgtcgtagccagagcggcctgacggactcggatctc
cagaccctccagggttcgggctccgccgtctcgttcgaagaggctcccgccgggtccaac
gatagcgccgagtga
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integrated database retrieval system
