Luteibacter pinisoli: FIV34_07310
Help
Entry
FIV34_07310 CDS
T06035
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpy
Luteibacter pinisoli
Pathway
lpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FIV34_07310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpy03400
]
FIV34_07310
Enzymes [BR:
lpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIV34_07310
DNA repair and recombination proteins [BR:
lpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FIV34_07310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AroM
RecG_dom3_C
AAA_22
AAA_30
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QDE39019
UniProt:
A0A4Y5Z344
LinkDB
All DBs
Position
complement(1582139..1585588)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVALPRPPLPANAKTRRYWAVPHGSSWALEVAEAARAHDGLLVVVVRDTRSADNLESEL
GVFAGELPVLHFPDWETLPYDVFSPHPEVVSQRIATLYRLPSVKRGVLVVPVATLMQRIA
PRTHITGAGLVLRKGQKLDISAEQRRLEAAGYRNVPQVAEPGDFAVRGALIDIFAMGSRE
PYRIELFDDEIESIRTFDPESQRSQQQVDGVDLLPAREFPVTEDAAKAFRTALRDRFPID
VRRCPLYQDMKEGVTPGGIEYYLPLFFAKTETLFDYIAGDALFVLGEGVLESSAAFWQQV
GDRYDQRAHDIERPVLPPAEIYLPPEQLREQLNKQVRIDVVEKGHEHAVDLGTQPAPELP
LNRKGEEPGTALRHFLAHYPGRTLVAADSAGRREALIEQLAGAGMKPTLSDSWKAFLASD
ERFAITVASLEQGFALNEPALTVLTERELFGERVRTERRKRVGAARDPESIIKDLTELQI
GSPIVHIDHGVGRYQGLLTLDVGDMPGEFLTIEYAKGDKLYVPVAQLGLVSRYTGTAPEL
APLHSLGGDAWERARKKAAEKVRDVAAELLAIYAQREAKVGEALSVDRQMIEEFAATFPF
EETLDQQRAIDAVIVDLAAPRAMDRVVCGDVGFGKTEVALRAAFAAATAGKQVAVLVPTT
LLAQQHYRNFADRFADWPVRVEVLSRFKSKKEVDNALERLADGQVDVMVGTHKLLQPDIR
FKNLGLVIVDEEQRFGVRQKEQLKKLRAAVDLLTLTATPIPRTLNMAMSGLRDLSIIATP
PAHRTAVRTLISTWQPALIREAIQRELARGGQVYFLHNEVDSIERMARELGELIPEARIR
VAHGQMPERELEQVMADFHRQRFNVLVSTTIIESGIDIPTANTIVVNRADRFGLAQLHQL
RGRVGRSHHRAYAYLIVPDRKAMTADAEKRLEALASLEELGAGFTLATHDLEIRGAGEML
GEEQSGQIQEIGFGLYTELLDRAVRALRSGKIPDFDLTSEHETEVELHLAALIPDDYLPD
VHTRLTLYKRIASARDDEGLRELQVEMIDRFGLLPDQAKCLFAVAQLKLMATPLGIRKVD
FGPSGGRITFREKPDVDPVLLIKLIQQQPRVFKLDGQDKLRVIMELPGSAERIRAAQETL
VSLGARRPS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtagcgcttccccgcccgccgcttcccgcgaacgccaagacccgccgctactgg
gcggtaccgcatggctcgtcctgggccctcgaagtggccgaggcggcccgtgcccacgac
ggcctgctggtggtcgtggtacgcgatacgcgcagcgcggataacctggaaagcgagctg
ggcgtcttcgccggcgagctgccggtgctgcatttccccgactgggaaacgctgccctac
gacgtcttcagcccgcacccggaagtggtgtcgcagcgtatcgccacgctctaccggctg
ccgtcggtcaaacgcggcgtgctggtggtgccggtggccacgctgatgcagcgcatcgcc
ccgcgcacccacatcaccggcgccggccttgtgctgcgcaagggccagaaactcgacatc
agcgccgagcagcgccgcctcgaagcggcgggctatcgcaacgtgccgcaggtggccgaa
cccggcgacttcgccgtgcgcggtgccctgatcgacatcttcgccatgggctcgcgcgag
ccctaccgcatcgagctgttcgacgacgagatcgagtcgatccgcacgttcgaccccgaa
tcgcagcgctcgcagcagcaggtggacggcgtggacctgctccccgcccgcgaattcccg
gtcacggaggacgctgccaaggccttccgcaccgccctgcgcgaccgtttcccgatcgac
gtgcgccgctgcccgctgtaccaggacatgaaggaaggcgtgacgccgggcggcatcgag
tactacctgccgctgttcttcgcgaaaaccgaaacgctgttcgactacatcgccggcgat
gcgctgttcgtcctcggcgaaggcgtgctcgaatcctcggcggcgttctggcagcaggtg
ggcgaccgctacgaccagcgcgcccacgacatcgagcgcccggtgctgccgccggccgag
atctacctgccgccggaacagctgcgcgagcagttgaacaagcaggtgcgcatcgacgtg
gtcgaaaagggccacgagcatgccgtcgacctcggcacccagccggcgcccgagctgccg
ctgaaccgcaagggcgaagagcccggcacggcgctgcgccatttcctcgcccactacccc
ggccgcacgctggtcgccgccgactccgccggccgtcgcgaggcgctcatcgagcagctg
gcgggcgcgggcatgaagccgacgctgtcggatagctggaaggccttcctcgccagcgac
gagcgctttgccatcaccgtggcctcgctggaacagggcttcgccctgaacgagcccgcg
ctgacggtgctcaccgagcgcgagctgttcggcgagcgcgtgcgcacggagcgccgcaag
cgcgtcggcgccgcgcgcgaccctgaaagcatcatcaaggacctgaccgagctgcagatc
ggctcgcccatcgtccatatcgaccacggcgtgggccgctaccagggcctgctgaccctg
gacgtcggcgacatgcccggcgagttcctcaccatcgagtacgccaagggcgacaagctc
tacgtgcccgtggcccagctcggcctcgtcagccgttacaccggcacggcacccgaactc
gcgccgctgcactccctcggcggagacgcctgggaacgtgcgcgcaagaaggccgcggag
aaggtgcgcgacgtggccgccgagctgctggcgatctacgcgcagcgcgaggccaaggtc
ggcgaggccctatcggtggaccggcagatgatcgaagaattcgccgccaccttccccttc
gaagaaaccctggaccagcagcgcgccatcgacgccgtgatcgtcgacctggccgcgccg
cgcgccatggaccgcgtggtctgcggtgacgtcggcttcggcaagaccgaagtagcgctg
cgcgctgccttcgccgcagccacggccggcaaacaggtggccgtgctggtgccgaccacc
ctgctcgcccagcagcactaccgcaacttcgccgatcgcttcgctgactggccggtgcgc
gtggaagtgctgtcgcgcttcaagtcgaagaaggaagtggataacgcgctggagcgcctc
gccgacggccaggtggacgtcatggtcggcacgcacaaactcctgcagccggatatccgc
ttcaagaacctcgggctggtgatcgtcgacgaggaacagcgcttcggcgtgcgccagaag
gaacagctgaagaagctgcgcgccgccgtggacctgctcaccctgacggccacgccgatc
ccgcgtacgttgaacatggcgatgagcggcctgcgcgacctgtcgatcatcgccaccccg
cccgcccaccgtaccgcggtgcgcaccctcatctcgacgtggcaacccgcgctcatccgc
gaagcgatccagcgtgagctggcccgtggcggccaggtgtatttcctgcacaacgaggtc
gactcgatcgagcgcatggcgcgcgagctgggcgaactgattcccgaggcacgcatccgc
gtggcccacggccagatgcccgagcgcgaactcgaacaggtgatggcggacttccaccgc
cagcgcttcaacgtgctggtctcgaccacgatcattgagtcgggcatcgatatcccgacc
gccaataccatcgtcgtgaaccgcgcggatcgcttcggcctggcccagctgcaccagctg
cgcggccgcgtcggtcgttcgcatcaccgcgcgtacgcctacctgatcgtgccggaccgc
aaggcgatgacggcggacgccgagaagcgcctggaagccctggcatcgctggaagagctt
ggcgccggcttcacgctggccacgcacgacctggagatccgcggcgccggcgaaatgctc
ggcgaggaacagtcgggccagatccaggaaatcggcttcggcctgtataccgaactgctg
gaccgcgccgtgcgcgcgctgcgttcgggcaagatcccggacttcgacctcacttcggaa
cacgagaccgaggtcgagctacacctcgcggcgctcatcccggacgactacctgcccgac
gtgcatacgcgcctgacgctgtacaagcgcatcgccagcgcgcgcgacgacgaaggcctg
cgcgagctccaggtggaaatgatcgatcgcttcggcctgcttccggaccaggccaagtgt
ctgttcgcggtggcccagctgaagctgatggcgacgccgctgggtattcgcaaggtcgat
ttcgggccgagcggcggacgcatcaccttccgcgaaaagcccgacgtcgacccggtgctg
ctgatcaagctgatccagcagcagccgcgcgtgttcaagctggatggccaggacaagctg
cgggtgatcatggagcttcccggcagcgcggaacgcatccgcgctgcgcaggaaaccctg
gtgtcactgggcgcgcgtcgcccgtcctga
DBGET
integrated database retrieval system
