Luteibacter pinisoli: FIV34_08520
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Entry
FIV34_08520 CDS
T06035
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lpy
Luteibacter pinisoli
Brite
KEGG Orthology (KO) [BR:
lpy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lpy03009
]
FIV34_08520 (rlmD)
Enzymes [BR:
lpy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FIV34_08520 (rlmD)
Ribosome biogenesis [BR:
lpy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FIV34_08520 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
MTS
TRM5-TYW2_MTfase
Methyltr_RsmB-F
RrnaAD
Methyltransf_11
Methyltransf_23
Methyltransf_15
PrmA
CMAS
Methyltransf_4
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
QDE39239
UniProt:
A0A4Y5Z3X2
LinkDB
All DBs
Position
1866636..1867937
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AA seq
433 aa
AA seq
DB search
MTDFEATITDLSHDGRGVARIDNKATFVSGALPGERVLLKYRKRHRNYDDAEIVSVIEAS
PDRVEPKCRHFGQCSGCSLQHMAPEAQIAAKQRVLAENFERIGKVTPENWLPPLADQPWN
YRRKGRFSVRFVNKKDRVLVGFREESNPRFVADIDVCEVIHPAIGPKVGLLATLIQGLDA
ARDIPQIEFAAGDDTVALVFRHLSPLSDSDRGKLTAFAQAHGFAIYLQPGNHSTVQPLWP
DAPRLQFAIPADNVTLDFLPLDFVQVNAGMNQLMLARTLALLDLQPTDKVLDLFCGLGNF
TLPMARHAAEVVGVEGEHGLVQRAAENAARNGISNASFRVANLFDDQRNEPWAKQAWDKI
LLDPPRAGADKVLEYLPRKGTNRIVYVSCHPGSLARDAGILVEKHGFRLVSAGVMDMFPH
TAHVESIALFERG
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacttcgaagccaccatcaccgacctcagccacgacggccggggtgtcgcccgc
attgataacaaggccaccttcgtgtccggcgcgctgccgggcgaacgcgtgctgctgaag
taccgcaagcgccatcgcaactacgacgacgccgagatcgtctccgtcatcgaggcctcg
cccgaccgcgtggagccgaagtgccgtcacttcggccagtgcagcggctgctcgctgcag
cacatggcaccggaagcgcagatcgccgcgaagcagcgcgtgctggccgagaatttcgag
cggatcgggaaggtcaccccggaaaactggttgccgccgctggccgaccagccgtggaat
taccgtcgcaagggtcgcttctcggttcgcttcgtcaacaagaaggaccgcgtgctggtc
ggcttccgtgaggaatccaacccgcgtttcgtggccgatatcgatgtgtgcgaagtgatc
cacccggccatcgggccgaaggtgggcctgcttgccacgctgatccagggcctggatgcg
gcacgcgatatcccgcagatcgagttcgcggcgggcgacgacaccgtggccctcgtgttc
cgccacctgtccccgctgtccgacagtgaccgcggcaagctcaccgcgtttgcgcaggcg
cacggcttcgccatctacctgcagccgggcaaccacagcaccgtgcagccgctgtggccc
gacgcgccgcgcctgcagttcgcgatcccggccgataacgtcaccctggatttcctgccg
ctcgacttcgtgcaggtcaacgccggcatgaaccagctgatgctggcgcgcacgctcgcg
ttgctcgacctgcagcccaccgacaaggtgctcgacctgttctgcgggctgggcaacttc
acgctgcccatggcccgtcacgccgccgaggtggttggtgtggaaggcgagcatgggctg
gtccagcgcgcggccgagaacgccgcccgcaacggcataagcaatgcctcgttccgcgtc
gccaacctgttcgacgaccagcgcaacgagccctgggcgaagcaggcctgggacaagatc
ctgctcgatccgccgcgcgccggcgccgacaaggtgctggaatacctgccgcgcaagggc
accaaccgtatcgtttacgtgtcgtgtcatccgggctcgctggcccgcgatgccggcatc
ctggtggagaagcacggcttccgcctggtctcggccggcgtgatggacatgttcccgcat
accgcgcacgtggaatccatcgcgctgttcgagcgcggctga
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