Luteibacter pinisoli: FIV34_14575
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Entry
FIV34_14575 CDS
T06035
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lpy
Luteibacter pinisoli
Pathway
lpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIV34_14575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpy03019
]
FIV34_14575
Enzymes [BR:
lpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIV34_14575
Messenger RNA biogenesis [BR:
lpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIV34_14575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_25
AAA_19
AAA_22
Flavi_DEAD
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QDE40345
UniProt:
A0A4Y5Z7N9
LinkDB
All DBs
Position
3194260..3195645
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AA seq
461 aa
AA seq
DB search
MSFDSLGLAPALLRALKEAGYEKPTPIQAAAIPEVLAGRDLMAAAQTGTGKTAAFLLPVL
HRLVNTPMMEGRRPVRVLILTPTRELAAQVQDNLTDYAKHVRVSSTVIFGGVGMGNQLHA
LRRGVEVVVATPGRLIDHMMQRSVDLSKVEVLVLDEADRMLDMGFLPALKRILSAVPQKR
QTLLFSATFAPEIKALAQQFMREPREVSTAPANTVANTVTHRVHPVDAAKKRDLLLHLLA
EDSRRQTLVFSRTKHGADKLVRYLEGAGIRAAAIHGNKSQNARTRALSDFKTNRTTVLVA
TDIAARGIDIDQLPVVINFDLPMVAEDYVHRIGRTGRAGAEGQAVSLVSHDESGLLRDIR
RLLKSDLELVNVAGFEPTTPLRLDAGAPRPKQQQRSAGGQGGGGQRQGQGGQRSAGGGQG
PRSGGEGRSHRPHGHSAAGTGENTGNHKRRRQRRGPATNKA
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgattcgctgggccttgcgcccgcgttgctgcgcgcgcttaaagaagccggc
tacgagaagccgaccccgatccaggccgcagccatccccgaagtcctcgccggccgcgac
ctgatggccgccgcgcagacgggtacgggcaagaccgccgccttcctgctccccgtgctg
caccgcctggtgaacacgccgatgatggaaggccgtcgccccgtccgcgtgctgatcctc
accccgacccgcgagctcgccgcgcaggtgcaggacaacctcaccgactacgccaagcac
gtgcgcgtcagcagcacggtgatcttcggcggcgtcggcatgggtaaccagctgcacgcc
ctgcgtcgcggcgtcgaagtcgtggtcgccaccccgggccgcctcatcgaccacatgatg
cagcgctcggtcgacctctcgaaggtcgaagtgctggtgctcgacgaagccgaccgcatg
ctcgacatgggcttcctgccggcactcaagcgcatcctctcggccgtgccgcagaagcgc
cagacgctgctgttctcggccacgttcgccccggaaatcaaggcacttgcccagcagttc
atgcgtgagccgcgtgaagtgtcgacggcgccggccaacaccgtggccaacaccgtgacg
caccgcgtgcacccggtggacgcggcgaagaagcgcgacctgttgctgcacctgctcgcc
gaagacagccgccggcagacgctggtgttcagccgcaccaagcacggtgccgacaagctc
gtccgttacctggaaggcgccggcatccgcgcggccgccatccacggcaacaagagccag
aacgcccgtacgcgcgcgctgtcggacttcaagaccaaccgcaccaccgtgctcgtcgcc
accgatatcgcggctcgcggcatcgatatcgaccagctgccggtcgtgatcaacttcgac
ctgccgatggtggcggaagactacgtgcaccgtatcggccgtaccggccgcgcgggcgcc
gaaggccaggccgtgtcgctggtgagccatgacgaatccggcctgctgcgcgacatccgc
cgcctgctgaagtcggacctcgagctggtgaacgtggccggcttcgagccgaccaccccg
ctgcgcctggatgccggtgcgccgcgcccgaagcagcagcagcgctcggccggtgggcag
ggcggtggcggccagcgccagggccagggtggccagcgctccgccggtggcggccagggc
ccgcgttccggtggtgaaggtcgttcgcaccgcccgcacggccattcggccgccggcacc
ggtgagaacacgggtaaccacaagcgccgccgccagcgtcgcggcccggccaccaacaag
gcctga
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