Lactiplantibacillus plantarum 16: Lp16_0823
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Entry
Lp16_0823 CDS
T02698
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lpz
Lactiplantibacillus plantarum 16
Pathway
lpz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Lp16_0823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpz03021
]
Lp16_0823
03400 DNA repair and recombination proteins [BR:
lpz03400
]
Lp16_0823
Enzymes [BR:
lpz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Lp16_0823
Transcription machinery [BR:
lpz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Lp16_0823
DNA repair and recombination proteins [BR:
lpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Lp16_0823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AGO07517
LinkDB
All DBs
Position
893349..896954
Genome browser
AA seq
1201 aa
AA seq
DB search
MAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTDSYQWFLDEGLREMFEDIMPIDDFAG
KLSLEFVDYQLLEPKYTVEEAREHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYFNEELDKNGRPSYGTTVIPNRGAWLELETDAKNVS
YVRIDRTRKIPLTELVRALGYGSDDDIIDMLGETDSLMLTLEKDVHKNTDDSRVEESLKD
IYERLRPGEPKTADSSRSLLTARFFDPKRYDFAPVGRYKVNKKLSMKTRLMDQTLAETLA
DPDTGEVIAQKDTVIDKNVMAKLSPYLERDDFKTVTYTPSDEAVVTNPMVLQVVKVYSQN
DPEKVVNVIGNGNIDLKFKHIVPADIIASINYFFNLQEGLGSTDDIDHLGNRRIRSVGEL
LQNQFRIGLSRMERVVRERMSIQDAATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN
PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA
KVNRYGFIETPYRRVDWTTHKVTDKIDYLAADEEDQFVIAQANSPLNDDGSFVEDTVLAR
NKEENLETPIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLDPHA
PLIGTGIEYKAAHDSGIALICRHEGTVEYVDAREVRVRRDDGSLDTYKLMKFRRSNGGKN
YNQRPIVKVGDHVDNDEVLADGPAMEGGELALGQNPLVAFMTWNGYNFEDAIIINERLVR
EDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNLDEDGIIRIGAEVKDGDILV
GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRENGDELSP
GVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGVP
SRMNIGQVLELHLGMAARKLGIHMATPVFDGAQDTDIWEAIREAGVDSDAKSIVYDGRTG
EPFDKRVAVGVMHYMKLSHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGLDMK
VLDSEDKEIELRDMDDDDDEVVNVDALSKFKQQQDEKAADKAAKADAAKPSETTNAQQDN
Q
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttggccggacatttagtaaaatacggtaaacaccgtacccgtagaagttatgcacgtatc
aaggaagttcttgatttgcctaacttgatcgaaatccagaccgattcttaccaatggttc
ttggatgaaggtctccgggaaatgtttgaagatattatgccgatcgacgatttcgcagga
aaactttcacttgaatttgtcgactatcaattattagaaccaaagtacaccgtcgaagaa
gctcgtgaacatgatgccaactactcggcaccattgcacgttaccctacgtttaactaac
catgaaactggtgaaattaagtcgcaagacgtattcttcggtgattttccattaatgact
gaacaagggacgtttattatcaacggtgccgaacgggtcattgtttcacaattggttcgt
tcacccggcgtttacttcaatgaggaattagataaaaatgggcgtcctagctacggcaca
acggttattcctaaccggggtgcttggttagaacttgaaactgacgccaagaatgtctca
tacgtacggatcgatcgtacgcggaagattccattgacggaattagtccgggccttaggc
tatggttctgacgatgacattattgacatgttgggtgaaactgacagtttgatgttgacg
ttggaaaaggacgttcataagaacaccgacgactcccgggttgaagaatccttaaaagat
atctacgaacggctacgtcctggtgaacctaagacggctgacagttcgcggagcctattg
actgctcggttcttcgatccaaaacggtatgacttcgcaccagttggtcgctacaaggtt
aacaagaagttaagcatgaagacgcgcttaatggaccaaacgttagctgagacattagct
gatcctgatactggtgaagttattgcgcaaaaggatacggtcattgacaagaatgtcatg
gctaaactatccccatacttggaacgtgacgactttaagacggttacttacacaccatct
gacgaagccgttgttacgaatccaatggtcttacaagttgttaaggtttattcacaaaac
gaccctgaaaaggttgtgaacgtgattggtaatggcaacattgatttgaagttcaagcac
attgtgcctgctgatatcattgcttccattaattacttcttcaacttgcaagaaggtctt
ggctcaaccgatgatattgatcacttgggtaaccggcggattcgttccgtgggtgaatta
ttgcaaaaccaattccggattgggttatcccggatggaacgggttgtgcgtgaacggatg
tcgattcaagatgctgcgacggtaacgccacaacaattgattaacattcgcccagtggtt
gcttcaattaaggaattctttgggtcatcacaattgtcacaattcatggaccaaaccaac
cccttaggtgaattaacgcataagcggcgtttatcagccttaggacctggtggtttgact
cgtgatcgggccggatatgaagttcgtgacgtgcactatacccactacggtcggatgtgc
ccaatcgaaacgcctgaaggccctaacattggtttgatcaacagtttgtcttcttatgcg
aaggtcaaccgttacggcttcatcgaaacgccataccggcgtgtcgattggacaacgcat
aaggttaccgataagatcgactacttagcagccgatgaagaagaccaatttgtgattgca
caagccaactctccattgaatgatgatggttctttcgttgaagacactgttttagctcgt
aacaaggaagaaaacttggaaacgccaatcgaaaatgtcgattacatggacgtttcgcct
aaacaagtggttgccgtcgcaacggcatgtattcctttcttggaaaacgatgactctaac
cgtgctttgatgggtgccaacatgcaacgacaagcggtgccgttacttgatcctcacgcg
ccattaattgggactgggattgaatataaagctgcacatgactcagggattgccttgatt
tgtcgtcatgaaggaacggttgaatacgttgatgctcgcgaagttcgcgttcgtcgcgat
gatggttcattagacacttacaagttaatgaaattccgtcgttctaacggtggtaagaac
tataaccaacggccaatcgttaaagttggcgatcacgttgataacgatgaagtcttagcc
gatggtccagcaatggaaggtggggaattagcccttgggcaaaacccattagttgctttc
atgacttggaatggttataacttcgaagatgccatcattattaatgaacgtttagtccgt
gaagacgtctacacgtcaattcatattgaagaatatgaatcagaagcacgtgacaccaag
cttggacctgaagaaatgactcgtgaaattcctaacgtcggggaagatgcattgaagaac
cttgacgaagacgggattatccggattggggccgaagttaaagacggtgacatcttggtt
ggtaaggtaacgcctaaaggggttacggaattgtcagctgaagaacggcttctccatgcg
atctttggtgaaaaggcgcgtgaagttcgggatacgtcactccgggttcctcatggtggc
ggcggtatcatccaggacgttaagatcttcactcgtgaaaacggtgatgaattatctcct
ggcgttaacatgatggttcgggtctacatcgcacaaaagcggaagatccaagttggtgac
aagatggccggtcggcatggtaacaaagggacggtttcaatcgtggttcctgaagaagac
atgccgtacatgcctgatgggacaccaatcgatatcatgttaagcccaatgggtgtgcct
tctcgtatgaatatcgggcaagtgctcgaattgcatttggggatggctgctcggaagtta
ggaattcacatggcaacgcctgtctttgatggtgctcaagatacagatatttgggaagcc
attcgtgaagctggggttgattcagatgccaagtcgatcgtctatgatggtcggactggt
gaaccgttcgataagcgggtcgctgttggggtcatgcactacatgaagcttagtcacatg
gttgacgataagatccatgctcgttcaatcggaccttactctttggttacgcaacaacca
cttggtgggaaagcgcaatttgggggccaacgtttcggtgaaatggaagtttgggccttg
gaagcttatggtgcagcttataccttgcaggaaatcttgacttacaagtccgatgacgtt
gttggtcgggttaagacctatgaagcaatcgttaagggcgaaccaattccaaagcctggc
gtgccggaatcattccgcgtgttggttaaggaattgcaagcactcggtcttgacatgaaa
gtcttggattctgaagacaaagaaatcgaattgcgggacatggatgatgatgacgatgaa
gttgtcaatgtcgatgcactcagcaagtttaaacaacaacaagatgagaaggctgcggac
aaggccgcaaaagctgacgccgctaagccttctgaaacaaccaacgctcagcaagataat
caataa
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