Lactiplantibacillus plantarum 16: Lp16_0854
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Entry
Lp16_0854 CDS
T02698
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lpz
Lactiplantibacillus plantarum 16
Pathway
lpz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Lp16_0854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpz03021
]
Lp16_0854
03400 DNA repair and recombination proteins [BR:
lpz03400
]
Lp16_0854
Enzymes [BR:
lpz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Lp16_0854
Transcription machinery [BR:
lpz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Lp16_0854
DNA repair and recombination proteins [BR:
lpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Lp16_0854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF961
HHH_5
SAM_EPH
WxLIP_PGBD
Motif
Other DBs
NCBI-ProteinID:
AGO07548
LinkDB
All DBs
Position
918902..919846
Genome browser
AA seq
314 aa
AA seq
DB search
MIEFEKPNIHKIDENDNYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSIQIDGVL
HEFSTIEGVTEDVTAIILNVKKIALKLESDETKTLEIDVKGPANVTAGDIIGDADVEVLN
PDLPICTVADGAHFHMRMTANTGRGYVSAEDNKHREDDMPIGVLAVDSLYSPIERVNYQV
ENTRVGQRDDFDKLTLDVWTNGSITPSEAISLSAKILTDHLSIFVNLTDEAKNTDVMVEK
EETHKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKTEADMMKVRNLGRKSLEEVK
AKLADLGLSLRKED
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgattgaatttgaaaaacctaacattcataaaattgatgaaaacgacaactatggtaag
tttgttgtagaaccgcttgaacgcggttatggtacaactttagggaattcacttcgtcgg
attcttctttcttctttacctggcgctgctgttactagtattcaaattgatggtgttctt
catgaattttcaacgattgagggcgtaacggaagacgttacagcaattatcttgaatgtt
aagaagattgcacttaagttggaatcagacgaaaccaagacgttggaaatcgacgttaag
ggtcctgctaacgttactgccggtgatatcattggcgatgcggacgtagaagtcttgaat
ccagacttaccaatttgtaccgtagcagacggggcacacttccatatgcgtatgaccgca
aatactggtcgtggttatgtttccgctgaggataacaaacatcgtgaagatgacatgcca
attggcgttttagctgttgattcattgtattctccaatcgaacgtgtcaactatcaagtt
gaaaacacgcgggttggtcaacgtgatgatttcgataagttaaccttagacgtttggaca
aatggttcaatcactccaagtgaagccattagtctatcagccaaaatcctgactgatcac
ctttcaatcttcgtaaatctcaccgatgaagctaaaaacactgacgtgatggtcgagaag
gaagaaacgcataaggaaaagatgttagaaatgacgattgaagagttagatctctccgtc
cgttcatacaattgcttgaagcgtgctggcatcaacacggtccaagaattaactaacaaa
actgaagctgatatgatgaaggttcgcaaccttggacgcaagtcactcgaggaagttaag
gcaaaattagctgaccttgggttatcattacgcaaagaagactaa
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