Lacticaseibacillus rhamnosus ATCC 8530: LRHK_1409
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Entry
LRHK_1409 CDS
T01961
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lra
Lacticaseibacillus rhamnosus ATCC 8530
Brite
KEGG Orthology (KO) [BR:
lra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lra03032
]
LRHK_1409 (topA)
03400 DNA repair and recombination proteins [BR:
lra03400
]
LRHK_1409 (topA)
Enzymes [BR:
lra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LRHK_1409 (topA)
DNA replication proteins [BR:
lra03032
]
Prokaryotic type
DNA Topoisomerases
LRHK_1409 (topA)
DNA repair and recombination proteins [BR:
lra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LRHK_1409 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
PI_PP_I
C1_2
Motif
Other DBs
NCBI-ProteinID:
AER64190
LinkDB
All DBs
Position
1349964..1352048
Genome browser
AA seq
694 aa
AA seq
DB search
MADKKLVIVESPAKAKTIEKYLGRTYKVVASLGHIRDLPKSQMGVDVENNYEPKYISIRG
KGDVIKSLKKDAKKASRVYLAADPDREGEAIAWHVSHILGLDPNAKNRVVFNEITKDAVK
NAFKTPRGIDMDLVDAQQARRILDRLVGYSISPLLWKKVKKGLSAGRVQSVALKLIIDRE
NEIKNFIPEEYWSLDAEFQKGRSKKFSASFYGIKNKKMALKNNEAVQKVLSQIDKAKPFS
VTNVVKKERKRFPAPPFTTSTLQQEANRKLGFRTRKTMMLAQQLYEGINLGGKLGTVGLI
TYMRTDSTRVSNVAKTETSHYLHEKYGEAYAAVKIRQGKLQEGAQDAHEAIRPTSTLRTP
ESLASVLDKDQMKLYRLIWSRFVASEMTPAIIDTVAVTLNQNDVTFRANGSQMKFEGFTK
LYVSSRDSGEKDNVLPPLAVGDAVKMLKTDPAQHFTQPPARYSEANLVKALEENGVGRPS
TYAPTIETIQKRYYVKLNARRFEPTELGEIVNSLIVEFFPDIVNIKFTANVESELDSIET
GEANWVKVIDQFYKPFEKEVAHAETGIEKIQIKDEPAGFNCDICGAPMVIKMGRYGKFYA
CSRFPDCRNTKAIVKEIGVICPKCHKGQVVERKSKRNRVFYGCSRYPDCDFVSWDKPVGR
DCPVCGHFLVEKKSKAGTQVVCPNNDYKEALQKA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagaagttagtcattgttgaatcgccagccaaagccaagaccattgagaag
tatcttggccgcacctataaagttgttgccagtttaggccatatccgtgatttacctaag
agtcagatgggcgtcgatgttgaaaataactacgaacccaagtacatctcgattcggggt
aaaggcgatgtgattaaatctttaaaaaaggacgcaaaaaaagccagccgcgtttatctc
gccgccgatccggatcgtgaaggagaagcaatcgcctggcatgtcagtcatatcttagga
ctggatccgaatgccaagaatcgggttgtttttaacgaaatcaccaaagatgccgttaaa
aatgcatttaaaacccctcgtggtatcgatatggatcttgtcgatgcgcaacaagcacgc
cgaattctcgatcggctcgtggggtactcgatcagcccgctgttgtggaagaaggtcaaa
aagggcctgagtgccggtcgggttcaaagcgttgcgttaaagctcatcattgaccgtgaa
aatgaaatcaagaactttattcctgaagaatattggtccttggatgccgaattccaaaaa
ggccgcagtaagaaattctccgccagtttttatggcatcaaaaacaagaaaatggcgctg
aagaacaatgaggcggttcaaaaagtcttaagtcagattgacaaggcaaagccattttcc
gtcaccaatgtggttaaaaaagaacgcaaacgtttccctgcaccgccatttaccaccagt
accttgcaacaggaagccaaccgtaagctaggattccgcactcgtaagaccatgatgtta
gcccagcagctctatgaagggattaacttaggcggtaagttgggtacggttgggctcatt
acgtatatgcgtactgattcaacccgggtttccaacgttgccaaaaccgaaacgagtcat
tatttgcatgaaaagtatggcgaggcttatgctgctgtcaaaattcgccaaggtaagctt
caagaaggggctcaggatgcccatgaagccatccggccaacgagtacgctacgaacaccg
gaaagcttggcgtcggttttagataaagatcagatgaaactgtaccgtttgatctggagt
cgctttgttgctagcgaaatgacgccggcgattattgacacagtcgccgtcacgctcaat
caaaatgacgtgacgttccgggcaaatggcagccagatgaagtttgaaggttttaccaag
ctatacgtttcctcgcgagatagcggtgaaaaggataacgttttaccaccgcttgcagtc
ggagatgctgtgaagatgctgaaaaccgatccggcgcaacatttcacccaaccaccggca
cgttattctgaagccaacttggttaaggctctggaagaaaacggggttggccgcccatcg
acgtatgcaccgaccatcgaaaccattcagaagcgttattacgtcaaactcaacgcccgc
cgctttgagcccacggaattaggcgaaatcgtcaatagtctgatcgttgaatttttcccg
gacatcgtcaatatcaagttcacggcgaatgtcgaatccgaacttgacagtatcgaaacc
ggcgaggccaattgggtcaaagtcatcgaccagttctataagccatttgaaaaagaggtt
gcgcacgccgagaccgggattgaaaaaatccaaatcaaggatgaaccggccggctttaac
tgcgatatctgtggcgcgccaatggtgatcaaaatggggcgttatggcaaattctacgcc
tgctctcgattccctgactgccgcaacaccaaggcgatcgtcaaagaaatcggcgttatt
tgtcctaagtgtcacaaagggcaggttgtggaacgcaagagcaagcgtaaccgtgtcttt
tatggctgctcccgttaccctgactgtgactttgtttcctgggataaaccagtcggccgc
gactgcccggtttgcggacatttcttagtcgaaaagaaatccaaagccggcacccaagtc
gtctgtcctaacaacgattacaaagaagccttacaaaaagcataa
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