Lacticaseibacillus rhamnosus ATCC 8530: LRHK_2511
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Entry
LRHK_2511 CDS
T01961
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lra
Lacticaseibacillus rhamnosus ATCC 8530
Pathway
lra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRHK_2511 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lra03021
]
LRHK_2511 (rpoC)
03400 DNA repair and recombination proteins [BR:
lra03400
]
LRHK_2511 (rpoC)
Enzymes [BR:
lra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRHK_2511 (rpoC)
Transcription machinery [BR:
lra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRHK_2511 (rpoC)
DNA repair and recombination proteins [BR:
lra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRHK_2511 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
DUF4090
Motif
Other DBs
NCBI-ProteinID:
AER65250
LinkDB
All DBs
Position
complement(2452985..2456647)
Genome browser
AA seq
1220 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVIDPGDTPMEKKQLLTEREYREKREEYGQTFNAKMGAEAIKELLQ
DVDLEKEVAELKEDLKSAQGQKRTRAIRRLDILDAFKESGNDPAWMVMDTIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKFYQCGVPRE
MALELFKPFVMRELVKRDMASNIKNARRKIDRQDDDVWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLVCEAYNADFDGDQMAIHVPLSDEAMAEARMLMLAAHHIL
APKDGKPIVTPSQDVVLGNYYLTMEQKGREGEGMIFKDTNEVLMALQNGYVHLHSRVGIA
ANSFTDKPFTDEQKQKIMVTSVGKAIFNEIMPKDFPYLNEPTQDNIVNGVPDKYFIDKGE
DIHAYLEDAPLIDPFKKGFLSDIIAQVFKVYKVQRTSDLLDDMKTLGYTQSTNSGLTVGI
ADITNLKEKPEIVAAAHKKVATVSKQFRRGLITDDERHDRVIQIWNDAKDEIQQKLVDSF
DPNNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVISNFREGLTVMEMFMST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLVVRAIREGNEMIEPLY
DRLVGRFTMKDVLDPKTGDVLVKRNTLMDEDMAQKIVDAGVEAVTIRSVFTCNTKHGVCQ
KCYGRNMATGEQVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVQEI
FEARNPKGEAVITEVTGEVTAIDENPAEHTREITVKGDTDTRTYSVPYASSVAVAEGDHI
NRGERLTGGSIDPKQLIKVRDVMATENYLLSEVQKVYRMQGVDIGDKHVEVMVRQMLRKI
RVMDPGDTNILPGTLLDIADFKEKNTQAIISGGIPATGRPVLLGITKASLETNSFLSAAS
FQETTRVLTDASIRGKNDPLVGLKENVIIGKIIPAGTGMATYRHEEPKSVGTVSDSVYSI
SDIEKQMKEKDNQQSDTDKQ
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataagtttgaaagtatgcaaatcggcttagcctcgccggacaagatc
cgcagctggtcttatggggaagtcaaaaagcccgaaacgatcaactatcggaccctaaag
cctgagcgggacggcttattcgatgaacgtatcttcggaccgaccaaagactgggaatgt
gcctgtggtaagtacaagcgaatccgctataagggaatcgtttgtgatcgctgcggcgtt
gaagtcacccggtccaaggttcggcgcgaacggatgggtcatatcgaattagctgcaccg
gtgacgcacatctggtacttcaagggaattcctagccggatgggtctggtactcgacatg
tcgccacgttcacttgaagaaatcatctattttgcttcctatgttgtgattgatccaggc
gatacgccaatggagaaaaagcagctgctaaccgaacgcgaatatcgcgaaaagcgggaa
gaatatggacagaccttcaatgccaaaatgggtgctgaagccatcaaggaattgttgcag
gatgttgatctcgaaaaagaagtcgctgaattaaaagaagacctgaaatcagctcagggt
caaaaacggacccgtgcgattcgccgtctggacattttggatgcgttcaaggagtccggt
aatgatccggcatggatggttatggacacgattcctgttattccaccggatttgcggcca
atggttcagcttgaaggaggccggtttgcgacctctgatctaaacgacttgtatcgccgg
gtcatcaaccgtaacaaccgtctgaagcgtctgcttgatctcaatgcaccaagtattatc
gtgcaaaacgaaaagcgcatgctgcaggaagccgtcgatgccttgatcgataacggtcgg
cgcggacgtccggttaccggacctggtaaccgcccgctgaagtccttgtcccacatgttg
aaagggaagcaaggccgattccgtcaaaacctgttaggtaagcgtgtcgattactctggc
cgttcggttattgatgttggcccatggttgaagttttatcagtgtggtgttccgcgtgaa
atggccttggaactctttaagccatttgtcatgcgcgaactggttaagcgcgatatggca
agcaatattaaaaatgctcgccggaagattgatcgccaagatgatgatgtctgggatgtc
ctcgaagatgtgattaaggaacggccagtccttttgaaccgtgcgcctactttgcatcga
ctgggtattcaggcatttgaacctgtcttggttgatggtaagtccattcgcttgcaccca
ctggtctgcgaagcttataacgctgactttgatggtgaccagatggcgattcacgtaccg
ctatctgatgaagcaatggcagaagcgcgcatgctgatgctggcagcgcaccacattttg
gcacctaaagacggcaagccaatcgttaccccttctcaagacgttgtgttaggtaactac
tacctgaccatggagcagaagggccgcgaaggcgaaggcatgatcttcaaggataccaat
gaagtgttgatggcgttgcaaaatggctatgttcatctgcacagtcgtgtcgggattgcg
gcgaactcctttacggacaaaccgtttactgatgagcagaaacaaaagattatggtgacg
agtgtcggcaaggcgatctttaacgagatcatgccaaaagacttcccgtatttgaacgaa
ccgactcaggacaacatcgtcaatggtgtgccggataaatacttcatagacaaaggtgaa
gacatccatgcttatcttgaagatgcacctttgatcgatccattcaagaaaggattcctg
tctgacatcattgcccaagtcttcaaggtttataaagttcagcggaccagtgacttgctg
gatgacatgaagacactcggctatactcagtcaacgaattccggtttgacggttgggatt
gccgacattacgaacttgaaggaaaagccagagattgtggcggcagcccataagaaggtt
gcaacggtttctaagcagttccgtcgtggtttaattactgacgatgaacggcatgaccgg
gtcattcagatctggaacgacgctaaagatgaaattcagcaaaaactggttgattctttt
gacccgaacaacccaatttccatgatgtccgattccggtgctcgtggtaacatctcaaac
tttactcagcttgccggtatgcgtggtctgatggctgcgcctaacggagggatgatggaa
gttcctgttatctcgaacttccgtgaaggtctaaccgttatggaaatgttcatgtcaact
cacggtgcacgtaaagggatgaccgatacggcgctgaagacggctgactcaggttacctg
acccgtcgtttggttgatgttgcccaagacgtcattgttcgcgaagaagactgcggtact
gatcgtgggttggttgttcgtgcaattcgtgaaggtaacgaaatgattgaaccgctgtat
gatcgtttggttggccggttcacgatgaaagacgttcttgatccaaagactggcgatgtg
ctggttaaacgcaatacgcttatggatgaagacatggctcagaagattgtggatgctggt
gttgaagccgttaccattcgttcggtctttacctgcaacacgaagcatggtgtttgtcag
aagtgctatggtcgtaacatggcaaccggcgaacaggttgaagtcggtgaagctgtcggg
accgtggcggcacagtcaatcggtgaaccaggtacccagctgaccatgcgtaacttccat
accggtggtgttgctggtggcgaagatatcacgcaagggctgcctcgtgttcaggaaatc
tttgaagcacggaaccctaaaggtgaagcggttatcactgaagttactggtgaagtaacg
gcaattgatgaaaacccagccgagcatacgcgtgaaattaccgtcaaaggtgacaccgat
acccggacttacagcgtgccatatgcttctagtgtggccgttgcagaaggagatcacatt
aaccgtggcgaacgcttaactggtggttcaattgatcctaagcaattgatcaaggtgcgc
gatgtgatggcaaccgaaaactacctgctttctgaagttcagaaagtttaccgtatgcaa
ggggttgacatcggtgataagcacgtcgaagtaatggtacggcaaatgttacgtaagatc
cgcgtcatggatccgggcgacacgaatattctgccaggcaccttgctcgacattgcggac
ttcaaggaaaagaacacgcaagcaatcatcagtggcgggatcccggcaacgggtcgtccg
gtcttgctggggattaccaaggcttctctggaaactaacagcttcttatcagctgcttcc
ttccaagaaaccacgcgtgtcttaaccgatgcatccattcgcggcaagaacgatccactg
gttggtctgaaagaaaatgtcatcatcgggaagatcattccggctggtaccgggatggcc
acctatcgtcacgaggaacctaagagtgtcggtacagtttccgacagtgtttattcgatt
tcagacatcgaaaagcagatgaaggaaaaagacaaccagcaaagcgacactgataaacag
taa
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integrated database retrieval system
