Lacticaseibacillus rhamnosus ATCC 8530: LRHK_989
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Entry
LRHK_989 CDS
T01961
Name
(GenBank) RNA-metabolising metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lra
Lacticaseibacillus rhamnosus ATCC 8530
Pathway
lra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRHK_989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lra03019
]
LRHK_989
Messenger RNA biogenesis [BR:
lra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LRHK_989
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Ish1
Motif
Other DBs
NCBI-ProteinID:
AER63778
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Position
complement(939774..941018)
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AA seq
414 aa
AA seq
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MTTIRFLNGLNTIGGNIVEFATKTSRVIMDFGVAADLSHETVASAIDNGKLPHVPELFFD
QPDSFANEAIFISHLHIDHMGALQYLQKNIPIYLSEPSYRLYQVLIRLGIEKPVANLHPL
AFESPLAIGDLTVTGFHSDHDEPGVMALLIDDGARRFAHSGDVRLNGPHADRVHAWASRF
NAEKISLFLLEGTSFSFDTPTPVEDQDHPSVPLTEMSLQTKFRQLLTDSSQLVVINPYNR
NYERMAAFQVSAHASGRQVVWEPNEAAILTAMTNQQPDAILGKTIQLTDLAQAPQQYVLQ
NSYAHLERLADLPISAYVHSNGEPLGDYDPRFAQLKDWLADHQIPLQFMNASGHATREDL
ITLAKEVNPRVIVPWHSFHPEREAEAIDAETNADVVLPERDLYYDFDALGEDDD
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
gtgacgacgattcgctttttaaacggtctcaataccattggcggcaacattgttgaattt
gctaccaaaactagccgggtcatcatggattttggggttgcagctgatttaagccatgaa
acggttgcctcggccattgataacggcaaattaccgcatgtcccggaactttttttcgat
caaccggattcgtttgccaatgaagccatcttcatctcgcacctgcatattgatcacatg
ggcgccttacaatatttgcagaaaaacattccgatttatctttccgaaccatcctatcgc
ctctatcaggtgctcattcgcttaggcatcgaaaaaccggttgccaatctccatccctta
gcctttgaatcgccactggcaattggcgatttgacagtaaccgggtttcacagcgatcac
gatgaacccggagtgatggcgctgttgattgatgatggtgcgcgccgctttgcccattcc
ggggacgttcgcctcaatggcccgcatgccgatcgcgtgcacgcctgggctagccgtttc
aatgctgaaaagatcagtctcttcttgcttgaaggcactagcttttcgtttgatacaccg
acaccagttgaagatcaggatcatccaagtgtgccactgaccgaaatgagcctgcaaact
aaatttcgccaattgctgactgacagctcgcaactggttgtcattaacccttacaatcgc
aattatgagcggatggcagccttccaagtttcagcgcatgcaagcgggcgtcaggtggtg
tgggagcctaacgaagcggcaattttaactgcaatgaccaaccagcagcctgatgcgatt
cttggcaaaacaatccagttaactgaccttgcacaggcgcctcaacaatatgttctgcaa
aatagttacgcgcaccttgaacggttggcagacttaccaatcagcgcttatgtacacagt
aacggtgaacctttgggggattacgatccgcggtttgctcagctgaaggattggttggcg
gaccatcaaattcctttgcagtttatgaatgcttccggccatgcaactcgcgaggactta
atcacgttggctaaagaagtgaacccccgggtgatcgtgccgtggcatagctttcacccg
gaacgtgaagctgaggcgattgacgcggaaacaaatgcagatgttgtcttacccgaacgt
gatctttattatgacttcgatgcgctcggagaagatgatgattga
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