Lacticaseibacillus rhamnosus LOCK908: LOCK908_0957
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Entry
LOCK908_0957 CDS
T02731
Name
(GenBank) Hydrolase (HAD superfamily)
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lrc
Lacticaseibacillus rhamnosus LOCK908
Pathway
lrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOCK908_0957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrc03019
]
LOCK908_0957
Messenger RNA biogenesis [BR:
lrc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOCK908_0957
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
OmpH
KH_2
Motif
Other DBs
NCBI-ProteinID:
AGP73602
LinkDB
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Position
927638..929212
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AA seq
524 aa
AA seq
DB search
MMSSVTLVSITLAAVIALAVGLLIGFALQKKLHQNSLDRATQTAEGIIEAAKKEAATLKK
EKLLEAKDENHRYRTQLEDELKDRRAEVQKSEHRLNQREDTLDRRDDTLDRKEQSLADRE
ANLNKRQQQLDEREQAISSEISKQQTELERIAELSHEQARTQILDQTQSELTHERAVMIK
ESEDEAKEAADKKAKVLIADAIQRSASDIVAETTVTVVNLPNDDMKGRIIGREGRNIRTL
ETLTGIDLIIDDTPQAVVLSGFDPIRREIARIALEKLIQDGRIHPARIEEMVDKARKEMD
DRIREIGEQAIFDVGIHNMHPDLIKILGRLHFRTSYGQNVLDHSIQVAKLAGVMAAELGE
DVTLAKRAGLLHDIGKALDHEVDGSHVEIGVELATKYKEPKTVINAIASHHGDVEPTSVI
SVLVAAADAISAARPGARSESLENYLHRLEKLEAIANSHAGVDHSFAIQAGREVRVIVQP
EKLSDDQSVILARDIRNEIEKELEYPGHIKVTVIRETRTVEYAK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttcagtaacactggtctcaataaccctcgcagcagtcatcgctttagcggtc
ggtttattgatcggatttgcacttcaaaagaagctccaccagaacagtttggatcgagcg
acgcagacagcagaaggtatcattgaggccgctaaaaaagaagcagcgactttaaaaaaa
gagaaactgctagaagcaaaagatgagaatcatcgctatcgaacccaacttgaagacgaa
ttgaaagatcggcgggcggaagtccagaagtcagaacatcgactgaaccagcgagaagat
actcttgatcggcgtgatgacacgcttgatcgtaaagagcagagtcttgctgaccgggaa
gcaaatttgaacaagcggcagcaacagttagatgaacgtgaacaagctatctcttctgaa
atcagcaaacaacagacagaactcgaacgaattgccgagctaagccatgagcaggctcgg
actcagatccttgaccagacacaatcagaattgacgcatgaacgcgccgtgatgattaaa
gaaagcgaagatgaagcaaaggaggccgcagataagaaagccaaggtactgattgcggat
gcaattcagcgcagtgcttcagatatcgttgccgagacaacggttacggttgttaattta
ccaaatgacgacatgaaaggccgaattatcggtcgtgaaggtcgaaatatccggacactt
gagactttgacggggattgacttaattattgacgataccccgcaagccgttgttttgagc
ggatttgatccgattcgacgggaaatcgcgcgaatcgcgttggagaagctcattcaagat
ggccgaattcatccggcccgcattgaagaaatggttgataaggcacgcaaagagatggat
gaccgcattcgtgaaatcggcgaacaagctatttttgatgtgggtattcataacatgcac
cctgacttgattaagattttgggtcgcttgcattttcgtacgagttacggtcagaatgtt
ctggatcattcgattcaggttgcaaagctggccggtgtgatggctgctgaattaggagaa
gatgttaccttagcaaaacgcgcggggttattacatgatattggtaaggcgctcgatcat
gaagtcgatggatcccacgttgaaattggggtcgagctagcaacaaagtacaaagaacca
aagacggtgattaatgccattgcgtcccatcatggtgacgttgaaccaactagtgtcatt
tcggtactagtcgccgccgctgatgctatttccgccgctcgtccaggcgcgcggtcggaa
tcacttgaaaattacctgcatcgcttagagaaattggaggctattgccaacagtcatgct
ggcgttgaccatagtttcgcgatccaggccggtcgtgaagtacgggtgatcgttcagcca
gaaaaactttctgatgatcagagtgtcattttggctcgcgacattcgcaatgaaattgaa
aaagaattagagtatccgggtcacatcaaggttacagtcattcgagaaacccgaaccgtt
gaatatgctaaataa
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