Lacticaseibacillus rhamnosus LOCK908: LOCK908_1393
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Entry
LOCK908_1393 CDS
T02731
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolising
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lrc
Lacticaseibacillus rhamnosus LOCK908
Pathway
lrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOCK908_1393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrc03019
]
LOCK908_1393
Messenger RNA biogenesis [BR:
lrc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOCK908_1393
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GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AGP74032
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Position
1344763..1346445
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AA seq
560 aa
AA seq
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MTKINLVALGGVRENGKNMYAVEVDDQIFVCDFGLKYPDNELLGIDVVIPDFSYLTENAD
RIAGIFLSHGHADAVGALPYFLVDHPVPVFGSELTIAMAKVFMQHDSKAKKFKDFHVIDE
KSVIDFGDVSVSFFKTTHSIPGSLGIDIETSEGQIVYTGDFKFDPSATPMYQTDWARLAQ
IGNKKVLALLSDSANAESPYPNANEHEIYDHIKETFEYQDGRIIVAGVASNIQRIQQVIN
AAASLGRRVVLTGRDVEKVVKTAIRMGYIKLPDDDILAKTKELKGLAPEKTVILETGRMG
EPMKSLQRMATSRHRLIHIHEGDLVFITTTIAHAMETMAARTKDMIYRAGGDVKVLGDDI
HSSGHAYKNDLQLMIDLLKPEYLVPVQGEYRLLAAHAEIAHEAGIPLANIFIVGMGDILR
YEKGQMNASGHVNAGNTMIDGIGVGDIGNIVLRDRKMLAEDGIFIAVVTIDRKKKRVVSK
PKVTSRGFVYLKTSRDLLAESGTLVTETVQKNLDNKEFDWTHLKQDVRDKLSRFLFEQTK
RRPVILPVIMEVNQNSAKRQ
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagatcaatctggtcgctcttggtggggtacgtgagaatggaaaaaacatgtac
gccgtcgaagttgacgaccaaatttttgtatgcgattttgggttgaaataccctgataat
gaattacttgggattgatgttgtgatcccggactttagctatttgactgaaaatgccgac
cgaattgccggaatctttctaagtcacggccatgcggatgcagtaggagccttgccttat
tttcttgtggatcatccagttccggtttttggctcggaattgacgattgcaatggccaag
gtcttcatgcagcatgacagcaaagccaagaagtttaaagactttcatgttattgatgaa
aagtcggtcattgactttggtgatgtgtcagtgtcgttctttaaaacaacgcatagcatt
ccaggctcgttaggtatcgatattgaaaccagcgaaggccagatcgtgtataccggcgac
tttaagttcgatcctagcgctaccccgatgtatcaaacggattgggcgcgattggcacaa
atcggtaataagaaagtgttggcgttgttatctgattcggccaatgcagagtcgccttat
ccgaatgccaacgaacatgaaatttatgaccatatcaaagaaacttttgaataccaagat
ggccgaattatcgtggcaggtgttgccagcaacattcagcgcattcaacaggtgattaat
gccgctgcatcgcttgggcggcgggttgtcttgaccggccgtgatgtcgaaaaggtcgtt
aaaaccgccattcgtatgggctacattaaattgccagatgatgacattttagctaaaacc
aaagagctaaaaggcttggcaccggaaaagaccgttattcttgaaaccggccggatgggt
gagccgatgaagtcattgcaacgaatggcaacatcccgtcatcggctgattcacatccat
gaaggggatcttgttttcattaccaccacgattgcccatgcgatggaaaccatggcggct
cgaacgaaagacatgatttatcgtgcaggcggggatgtcaaagtcttaggcgacgatatt
cactcttccggccacgcttataagaatgatttgcaactgatgatcgatttactcaagcca
gaatacttggtgccggtacaaggcgaatatcgcttacttgcagcccacgcggaaattgcg
catgaagctggcattccgttagctaacatcttcattgtcgggatgggcgatattttgcgg
tacgaaaaaggccagatgaacgcctctggtcatgttaacgccggcaataccatgatcgat
ggcattggcgttggcgatatcggcaatattgttttacgtgatcgcaaaatgctggccgaa
gatggcattttcattgcggttgtcaccattgaccgtaagaaaaagcgcgttgtttccaag
cccaaagtcacaagtcgcgggtttgtttatcttaaaaccagtcgtgacttattggccgaa
agcggcaccttggtaacggagacggtacaaaagaatctggataacaaagaatttgactgg
acccatttgaaacaagatgttcgagataaactcagccgcttcttattcgaacagacaaag
cggcgtcctgtcattttgccggtcatcatggaagttaatcaaaacagtgcaaaacggcaa
taa
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