Lacticaseibacillus rhamnosus LOCK908: LOCK908_1635
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Entry
LOCK908_1635 CDS
T02731
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lrc
Lacticaseibacillus rhamnosus LOCK908
Pathway
lrc03410
Base excision repair
lrc03430
Mismatch repair
lrc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LOCK908_1635
03430 Mismatch repair
LOCK908_1635
03440 Homologous recombination
LOCK908_1635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrc03400
]
LOCK908_1635
DNA repair and recombination proteins [BR:
lrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LOCK908_1635
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LOCK908_1635
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LOCK908_1635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AGP74273
LinkDB
All DBs
Position
complement(1599903..1602197)
Genome browser
AA seq
764 aa
AA seq
DB search
MTQYQWQLAEQPDPATTQQLSQTLAVPPFLATLLWQRGIKNKPDYEAFVHPDISRLHDPF
ALHDMDKAVARILEAIEQDQKITIYGDYDVDGLTSSSIMLETLQSLGAEPDVFIPDRFTD
GYGPNAEVYTYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPETLPHAVA
VVHPRHPEGHYPFGDLSGAGVAFKVATALLGEPPLESIDLAALGTIADLVKLTDENRIIA
QLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRMGDANPGVTLLTT
FEEDVAAELAQQVGKLNQERQGLVSKIAQEALTMAQTPENQAAKTLLLASKGWHEGVVGI
VASKVVEATGKPTLIMNIADNGVTAKGSGRSIEAYHLFNALEPAKDKMVHFGGHHMAVGL
TAKTAELSAIHAQMEAAASTMLKTVPKPALPIAARLEVGDLTLEHYELIRQLAPFGQGNP
EPTFSVRPQVVQNVKPIGKENAHLRFQIDQGVNVIGFGFGSAAATLAEAQAIKLAVQLDQ
NTWQGNTSLQLMLKDYAFKQPQVVDWRMPTVDGSQFKAQRNYVFFDAKVKQQFEHQFSFG
GPTMLAEQVTTSLADAVLVDLPKDRGQLVTVMQHIQLPVTVMFYGAPSRLVAMPTRSEFG
AVLHFLKAHPGFDKHHIPAIAKAVHLTVHQVILAIQVFFELDFVTIEGAFISPVTAPAKK
PLQTAKAYVAREAFLTLARQLQTMPRVQLETMLVTEHSDSEVGS
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagtatcaatggcaacttgcagaacaaccggatccggcaacgacacaacaattg
agccagacattggcagtcccgccgtttctggcgacgttgttgtggcaacgtggcattaaa
aataagccagactatgaggcctttgtgcacccggacattagtcggttgcacgatccgttt
gccttacacgatatggacaaggcggttgccaggattttggaagcaattgagcaagatcaa
aaaattacgatttatggtgactatgacgttgatggcttaaccagcagctcgatcatgttg
gagacactgcaaagcttgggcgccgagcctgatgtttttattccggatcggtttactgac
gggtatggtcccaatgcggaagtttacacctacttgcaaaaaaccggcacgcaattggtc
attacagtcgataacggggttgccggtgcagccgtcattgatcctgcccaagcagccggc
atggatgttgtggttacggatcaccatgagttgcctgaaacgcttccgcatgccgtagcg
gtcgtccatccccgccatcccgagggccactatccgtttggcgatctttcgggtgcaggc
gttgctttcaaagtggcaacggccttacttggcgagccgccgctagagagcattgatctg
gcagcattaggcacgattgccgatttggttaagctaaccgatgagaatcggatcattgcc
cagttagggttgaaaatgatccaaacacaaccgcgcgtcggactcgccgccattttaaaa
gaagccggcgtggcaccggaaacagtcaatgaaaccacggttggctttgtgattggtccg
cggctgaatgctttgggacgaatgggtgatgcgaatcccggggtgacattgttgactacc
tttgaagaggatgtcgctgccgaattggcgcaacaagtcggcaagttaaatcaggagcgg
caagggttggtcagcaaaattgcccaagaggccctcaccatggcccagacgccggaaaat
caagcggccaaaacgctgctgcttgccagtaagggatggcatgaaggggttgttgggatc
gttgccagtaaagtggtggaagctaccggtaaaccaactttgattatgaacattgccgat
aatggcgtcacggctaaaggttctggccgttcgattgaagcgtatcacttgtttaacgcg
ctagaaccggctaaagacaaaatggttcattttggcgggcatcatatggcagttgggtta
acggctaaaaccgctgaactatcagccatccatgcgcaaatggaagcagccgcgtcaacc
atgctcaagaccgtgcctaagccagcgcttccgattgctgcgcgcctggaagttggcgac
ttaacgctagagcattatgaattaattcgccagctagcaccatttggacaaggtaatccg
gaaccgactttttccgtgcggccccaagtggttcagaatgtgaagccgatcggtaaggaa
aatgcccatcttagatttcaaattgatcaaggcgtcaatgtcatcgggtttggttttggg
tctgcagcggcaacattagctgaggctcaagctattaaattagccgttcaactggatcag
aacacctggcaaggcaataccagcttacaactcatgctgaaggattatgcgttcaagcag
cctcaagtcgttgactggcggatgccgacagttgatgggagccaattcaaggcgcaacgg
aattacgtcttctttgatgcaaaggtcaaacaacaattcgaacatcaattttcgtttggt
gggccgaccatgctagctgagcaagtcacaacgtcactggctgatgcggttttggttgac
ttgcctaaagatcgtggccaattggtgacggttatgcagcacattcaactgccggtgacg
gtcatgttttatggtgcacccagtcggttagtggcaatgccgacgcgaagtgaatttggt
gctgttctgcattttctaaaagcacatcccggcttcgataagcatcatattccggcgatt
gccaaggccgtccatttgactgtccatcaagtgatcttggcgattcaggtgtttttcgag
cttgattttgttacaatagagggtgcttttatttctcccgtcacggcaccggctaaaaag
ccattgcaaaccgccaaagcttatgttgcgcgcgaggcatttttaacgcttgctcgccaa
ctgcaaaccatgccgcgggttcagcttgaaacgatgttggtgacagagcattcagacagt
gaggtaggatcatga
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