Lacticaseibacillus rhamnosus LOCK908: LOCK908_2599
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Entry
LOCK908_2599 CDS
T02731
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lrc
Lacticaseibacillus rhamnosus LOCK908
Pathway
lrc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOCK908_2599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrc03400
]
LOCK908_2599
Enzymes [BR:
lrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOCK908_2599
DNA repair and recombination proteins [BR:
lrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LOCK908_2599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
RecG_dom3_C
DUF7398
Motif
Other DBs
NCBI-ProteinID:
AGP75206
LinkDB
All DBs
Position
complement(2579964..2583491)
Genome browser
AA seq
1175 aa
AA seq
DB search
MNLIDMVQADPELSALWPKLETGRHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHA
DELAADLSSLLGDALVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLA
GYKRILPAPAAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDI
YPLNQDDPIRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLTDAGARI
GKQATAYKAKVKDAAAKQAITDGLLTTSQQLQALERPENLALYAPELYPEHHRITDYLAG
DALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEGRLLPKTPNPTIQALNQRDRHPRLYLS
LFQKGMGQLRLDSLTNVPSRNVQQFFSQMPLLKTETDRWVKQKQTVVFLVSDKNRLDKLS
ATLHDFEISNVVTEPNQLLSGKVQLTDGSLKNGFELPDLKLVVVTEHELFNARQRRRARH
QTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIP
VDQLNLVQKYVSADGKTPNVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYA
FGPDDDLQQKFEDEFPYPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAA
FKAVDYGKQVAILVPTTILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNG
TIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRT
LNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDM
ERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANT
LIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSG
FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRGLKTVQKTDAEIDLG
LEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLK
RFADLAWVDHVQKNDQKMTVVLTPQATAKAQGEPIFKALAATTLKAQVAIADGKLTVTLA
VPATMKEDEWLGQLTAFMKGLLAVVNPQPGKKPAA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaatcgacatggtgcaggcagatccggaactgtcggcattatggcctaagctc
gagacaggccgccatttggtgacaggactatcaggttcggccaagacggtcttttttggc
gcactcttgcagcagcaaaaaaagcagctgctgattgtcgaaaataatcggtttcatgca
gacgagttggcagcagatttgagtagtttattaggcgatgcgcttgtttatgattttccg
gttgaagatgtattggcggctgaagtggcggtcagttcaccggaaacccgcaacgaccgg
atcaacgcactgacctttattcaaagcggccaaccgggcattattgttaccagcctggca
ggatataagcgaattttacccgcaccggctgcatgggcggcaagtgagttggttgttgat
atggattcagagcttgatccgcaaacggtcgccaagcagcttgtggcgatgggttatcgg
cgtgattcattagtgagtgcgcccggccaatttgccattcgcggtgggattatcgatatt
tatccattaaatcaggatgatccgattcgcattgagttgtttgatacggaaatcgactcg
attcgcagcttcgacattgctacccagcgcagtttgaaaaagcttgatcagattgtcatt
gcaccggctactgacatgatcgcttccgatcaggtgctgaccgatgccggtgcgcgaatc
ggtaagcaggcaacagcttacaaagcgaaagtcaaggatgcagcggcaaagcaagcgatt
accgatggcttgttgacgaccagccagcagttacaagcattagaacggccagaaaacctg
gcattgtatgcgccggagctgtatccggaacatcaccgcattactgattatcttgccggt
gatgcgctggtagcgtttgatgattacagtcgcctgttggatagtgatacgaatttggtg
caggatacggctgaatggtattcacagctgcaagaggaaggccgtttgttgcctaaaaca
cctaatcctacgatccaagcgcttaatcagcgtgatcggcatccgcggctttacttgagc
cttttccaaaaaggaatgggtcagttgcggttggatagcttgactaacgtgccgagtcgc
aatgttcaacaattctttagtcagatgccattgctcaaaaccgaaacggatcggtgggtg
aaacaaaagcagaccgtggttttcctggtttccgataagaaccgtttggataagctgagt
gctactttacatgattttgagattagtaatgtggtgaccgaacctaatcagctgctttca
ggaaaagttcagttaaccgatggcagtctgaagaacggctttgaattgccggatttgaag
ctggtagtggtgacagaacacgagctgttcaatgctcggcagcggcggcgggctcgccat
cagacgttggcaaatacggaacgcctccgcagctataatgaattaaagcctggcgattat
gttgttcatgtcaaccacgggattgggcaatataccggcatggagacgcttgaagttgac
ggtgtccatcgcgattacatcaccatcgtttatcgcaacaatgacaaactgtttattccg
gttgaccaattaaatctggttcagaaatatgtttctgcagatggcaaaacgcctaacgtc
aataagcttggcggtaccgagtggcaaaagaccaaacgcaaagtggcggctcgaatcgaa
gacattgccgacgagctgattgacttgtacgcaaaacgggaagcggaaaaaggttatgct
ttcgggccggatgatgatctgcagcaaaaatttgaagatgagtttccttatcccgagacg
cctgatcaactgcgatcggcaaaagaaattaagcgggatatggagaaacccaaacccatg
gatcgcttgcttgtcggggatgtgggctttggcaaaaccgaagtcgcgttacgggcagca
tttaaagcagttgactatggtaagcaggtcgcaattttagtaccgactaccatcttggcg
cagcaacattttgacaccatgaaggatcgatttgccgattttccggttaaaatcggcttg
ttatcgcgcttccagacaccgcatcaaaataaaatgacgattaaaggactcaaaaacggc
acgattgacattgttgtcggcacccatcgactgctttctaaagatgtggcatttcgtgac
ctcggtttgttggtgattgatgaagagcagcgttttggggtgaagcacaaggaacggatt
aagcaactgaaaagcaatgtggatgtgttaacgctgacggcaacgccaattccacgtacg
ctaaacatgtcgatgcttggcgtgcgggacttaagtgtcattgagacgccaccgacaaat
cgctatccgattcagacctttgtgatggagcaaaaccccggggtcattcgggaagccatc
gaacgcgaaatggaacgcggtggtcaagtcttttacctgcataatcgggtggaggatatg
gagcgaaccgtgagtcaattggaagagctagtgcctgacgctagcatcgggtatgcccac
ggtcagatgacggaaacccagctggaaaatgtcatctatgattttctgcatggcgcgtat
gacgtattagtgaccacgaccattattgaaaccggggtcgatatgccgaacgccaatacg
ctgattattgaaaatgcggatcattatggattgtcccagttgtatcagttacgcggacgt
atcgggcgttccagccgtgttgcttacgcttatttcatgtatcaaccgatgaaggtactt
aatgaagtggccgaaaaacggctgcaggcgattaaggatttcacggaattaggtagcggc
tttaagattgcgatgcgtgatttgtcgattcgcggtgcggggaacttgttaggcaaacaa
cagcatggatttattgattcggttgggtatgacttgtacacgcagatgttacaagaggcg
gttaacaaacgccgcggacttaaaaccgttcaaaaaaccgatgcggaaatcgacttgggt
ctggaagcatacctgccaacggattatgttgccgactcgcgccagaaaattgaactgtac
aaacggattcgtgaagcagacagtgatgaagccgaaaccgagattagtgaagatttgatt
gatcgattcggcgattatccacagccggtgacgaatcttttggcaatcgcacatctgaaa
cgtttcgctgatttggcttgggtggatcacgtccagaaaaacgaccagaaaatgacggtg
gtgttaaccccgcaagcgactgctaaagcacaaggcgaaccgatcttcaaggcgttggcg
gctacgactttgaaagcacaagtagcaattgccgatggaaagctgacggtaacgctcgct
gtgccagcaaccatgaaagaagacgagtggctagggcaactaactgctttcatgaaggga
ttgctggcggttgtgaatccgcagccgggaaaaaagcctgccgcctaa
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