Lacticaseibacillus rhamnosus LOCK908: LOCK908_2617
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Entry
LOCK908_2617 CDS
T02731
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lrc
Lacticaseibacillus rhamnosus LOCK908
Pathway
lrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOCK908_2617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrc03019
]
LOCK908_2617
03009 Ribosome biogenesis [BR:
lrc03009
]
LOCK908_2617
Enzymes [BR:
lrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOCK908_2617
Messenger RNA biogenesis [BR:
lrc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOCK908_2617
Ribosome biogenesis [BR:
lrc03009
]
Prokaryotic type
rRNA helicases
LOCK908_2617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGP75224
LinkDB
All DBs
Position
complement(2601911..2603419)
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AA seq
502 aa
AA seq
DB search
MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL
QHIDKADRSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHP
QIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLF
SATMPAAIMRLTNKFMKEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPD
LALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTIEDLTKK
RMLPMKPPTAEEALMGQISSGLATIKEQVEANDTEKYEAMAETLLENYTPLQLVSAYLKA
VSPDDASAVPVKITPERPLPRRGRNNHGHGNNRGGYKGGYKGKRRDGGYQGNRDGKRSYD
KKRNFGDKRKNVKRNFKIRTGE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactaggtttggatcatgatctcttaaaggcaatcgcccagtcaggt
tttgaggaagcgacgccgattcaagcggagacgatcccactggttctggaaggcaaagat
gtgatcggtcaagcccagaccggtaccgggaaaacggcagcatttggcttgccaattctg
caacacatcgataaagccgaccggagtatccaagcattggtcatttccccaactcgggaa
ttggcgattcagacccaagaagagctttaccgtttaggccgcgacaagaagatcaaggtt
caggctgtctatggcggcgctgatattcgccgccagattcgtcagcttgctgaccatccg
caaattgtggttgggacacctggtcggattcttgatcatattggtcgtcataccttaaag
ctggaacaccttgataccttggtgttggatgaagccgatgaaatgctcgatatgggcttc
attgacgatattgaaaagattgttgaacaaatgccgactgagcgtcaaactctactgttc
tccgcgacgatgccggcagcgatcatgcgtttaaccaacaagttcatgaaagaacctgtg
attgtcaagattaaggctaaggaactgacagcagataccgttgagcaatattatgttcgg
gccaaggactatgaaaagttcgatgtcatgacacgactatttgacgttcaggatccggac
ttggcgctgatttttggacggaccaagcgtcgtgttgacgaactgacacggggattaaag
gcgcgcggatatcgggctgaaggtattcacggcgatttaacccagcaaaagcgaatgagc
gttttgcggcagttcaagagcggccaattagattttctggttgcaactgatgtcgctgct
cgtgggttggacatttctggtgtcacccatgtttacaactatgatatcccgcaagatccg
gattcctatgttcaccgtatcggtcggacgggacgcgccggacataaaggggtatccgtt
acctttgtcacgccaaatgaaattgaatatctgcacaccattgaggatctcaccaagaag
cggatgttaccgatgaagccgccgacagctgaagaagcattaatgggccagatctccagc
ggcttggcaaccatcaaggaacaagttgaagctaacgataccgaaaagtatgaagcaatg
gctgaaaccttgttggaaaactacaccccgttgcagctggtttcggcgtatctcaaggca
gtcagccctgacgatgcgagtgccgttccggttaaaattacaccagaacgtccattacca
cgtcgcggccgcaacaatcacggccatggtaacaatcgtggcggttataaaggcggctac
aaaggcaagcggcgcgatggcggctatcaaggtaatcgcgatggcaagcgcagttatgac
aagaagcgcaactttggcgacaaacgtaaaaacgttaagcgtaatttcaaaatccgtacg
ggtgaataa
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