Lolium rigidum (rigid ryegrass): 124646875
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Entry
124646875 CDS
T09103
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03030
DNA replication
lrd03420
Nucleotide excision repair
lrd03430
Mismatch repair
lrd03440
Homologous recombination
lrd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124646875
03420 Nucleotide excision repair
124646875
03430 Mismatch repair
124646875
03440 Homologous recombination
124646875
03460 Fanconi anemia pathway
124646875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124646875
03032 DNA replication proteins [BR:
lrd03032
]
124646875
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124646875
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124646875
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124646875
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124646875
MMR (mismatch excision repair)
124646875
DSBR (double strand breaks repair)
HR (homologous recombination)
124646875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
RMI1_C
KOW2_Spt5
Motif
Other DBs
NCBI-GeneID:
124646875
NCBI-ProteinID:
XP_047042874
LinkDB
All DBs
Position
4:complement(34964294..34969020)
Genome browser
AA seq
738 aa
AA seq
DB search
MGGGTEADLTHGAVEAMSRPAARLRPVLQVVCGPTAHGHGVPRYRVLLSDGMHSQQAILP
TSVNGLVSAGRLRGGSVVRVLDYVSQSAYYERVITVIQLEILQTECTLIGSPKVYQGLFR
SSVAAREEHAVNPFYCPLLTQNTTNAKMQQLSLNSHQGKKPVVPPFGFSLGHPDNTCGLP
EQSLYQQQPLVYMNRGPVVNNDAPSYVTPIAVLNPYQGRWTIKGRVTAKTDIRHFGAGKV
FSFDLLDAQGGEIRAICFNSAVDQFCEQIVVGNVYLLTGGSLKPAQKFNHLSHDYEVVLD
TSASVAICSSDDSSIPWQQYNFQLIKEIQNLHNGDMIDLLGVVTSVNHSVTVTRKDGMET
QKRSLQLKDMSGCSVEITLWGNVCNAEGQLLYSMCLSGFDPVLALKGGRVHEFSGKTVDT
ISSSLLKVNPDLPEAERLVQWYITEGEFGVCTSLSQEILVMNKTIAHIEEEALGRSDKPD
WITVEGTISHISTERFSYPSCTRELDGKRCYRKVTHNGDGTWHCPKCEQSSQNCEQRYLL
QCKIEDRTGTTVATAFQKAGEEILGLTAQELFTIKNVSQDAAQFAEIIKRACSQLYLLKL
KIKEEVYGDEMRVKVSIAKAERLDVTLKQSSVPRASHILSDDGLGLRAAVNVRNCPAVMD
MQKPAAGGGFAASSSCYRPPNAGSDPCFKQSNLVSLSTSPESFHGRLHVMPLQQAPPPSD
VISLGNYSLKNGRPGHFA
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggggggagggacggaggcggacctgacccacggcgccgtggaggccatgtcgcggccg
gcggcaaggctgcggccggtgctgcaggtggtgtgcggccccaccgcccacggccacggc
gtgccgcggtaccgggtcctgctctccgacggcatgcactcccagcaggccatcctcccg
acctccgtcaacggcctcgtctccgccggccggctccgcggcggctccgtcgtacgcgtc
ctcgactacgtctcccagtccgcctactacgaaagggtcatcactgttatccaacttgaa
atactgcaaactgagtgcacattgattggcagtcccaaagtttatcagggtctgttccgc
tcttctgttgctgcaagggaagaacatgccgtgaacccattttattgtccactgctgaca
caaaatacaacaaatgccaagatgcagcagctttcactgaactctcatcaagggaaaaag
cctgtggttcctccctttggttttagccttggccatcctgacaatacttgtgggctccct
gaacagtctttgtatcagcaacaacctctggtgtatatgaatagaggtcctgttgtcaat
aatgacgcgccatcttatgtcaccccgattgctgtgttgaacccataccaaggaagatgg
actatcaagggcagggtgactgcaaagactgatatccggcactttggtgcagggaaagtc
ttctcctttgatctccttgatgcacagggtggagaaattcgtgcaatatgtttcaattca
gcagttgatcagttttgtgagcaaattgtggttggaaatgtgtacttgctaactggagga
tcgcttaaacctgcacagaagttcaaccatttaagccatgattacgaagtggtactggat
acttcagcgtctgtagcaatttgctccagtgatgatagcagcatcccttggcagcaatac
aatttccaactgatcaaagaaatacaaaatctgcataatggagatatgatagatttgctt
ggagttgttacatcagttaaccattctgtcacagtaacgcggaaggatggtatggaaacc
cagaaaagatcccttcaactgaaggacatgtctggttgcagtgtggaaataactctttgg
gggaatgtctgtaatgctgaaggtcagctgttgtactcgatgtgcctttctggatttgat
cctgtacttgctctgaaaggtggccgtgtccatgaattcagtggcaaaactgtggacaca
atcagctcaagcttgttaaaagtaaatccggacttgcctgaggcagaaaggctggtgcag
tggtacataactgaaggggaatttggtgtctgtacttctttatctcaggaaatcttagtc
atgaacaaaacaattgcacatatcgaggaagaagctctagggcgatcagataagccagat
tggataactgttgaaggtacaatttcacacatcagcaccgagaggttttcttacccatct
tgcaccagggagcttgatggtaagcgctgctacagaaaggttactcataatggtgatggg
acgtggcattgtcctaaatgcgagcagagctctcaaaactgtgagcagaggtacttgttg
cagtgcaagattgaggatcgcactgggacaaccgttgctactgcattccaaaaggctggc
gaggaaatacttggcctcacagcacaagagcttttcacgataaagaatgtgtctcaagat
gccgcacaattcgcagaaataataaagagggcctgttctcagctatacctattaaagctg
aaaatcaaggaagaagtctatggtgacgagatgcgtgtgaaagtcagcatcgctaaagct
gaaagattggatgtcaccctgaaacagagttctgttcccagagcatctcatatcctttca
gatgatggcttaggcctgagggcggcggtgaatgtgcggaactgccccgcagttatggat
atgcagaaaccagcagctggagggggcttcgctgctagttcaagctgttataggcctcct
aacgctggctcagacccatgcttcaaacaatcaaacctggtcagcctgagcacatcccca
gagagtttccacggaaggctacatgtgatgcctcttcagcaggcaccaccaccttcagat
gtgatcagtctgggcaattattcactaaaaaatggtcggcctgggcacttcgcttga
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integrated database retrieval system
