Lolium rigidum (rigid ryegrass): 124646880
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Entry
124646880 CDS
T09103
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03030
DNA replication
lrd03420
Nucleotide excision repair
lrd03430
Mismatch repair
lrd03440
Homologous recombination
lrd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124646880
03420 Nucleotide excision repair
124646880
03430 Mismatch repair
124646880
03440 Homologous recombination
124646880
03460 Fanconi anemia pathway
124646880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124646880
03032 DNA replication proteins [BR:
lrd03032
]
124646880
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124646880
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124646880
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124646880
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124646880
MMR (mismatch excision repair)
124646880
DSBR (double strand breaks repair)
HR (homologous recombination)
124646880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
RMI1_C
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
124646880
NCBI-ProteinID:
XP_047042879
LinkDB
All DBs
Position
4:35367215..35371154
Genome browser
AA seq
711 aa
AA seq
DB search
MGGEAEVNLTHGAVAAMSRMVQGLRPVLQLPEAPRPTWMVGGHTELYGLLLSDGVHSQKG
MLATSLNGLVKAGLLRGGSVVRVLDYICNNSVENPRVIAVIQLEILQTECTLIGSPTFFD
PNVSQPKLRSYSDSLGIHRHCMISGAEQGVTNIGCYPDQSLLDSSNAARVEIMQRPYDLV
PTPNTIDAKMQQLSLKSYQSQVPSTVGGFDSPGNTYGQPVQSLCEQTPPMYLNRYPVVNS
EAHLIPISALTPYQSRWTIKVRVTGKTEPGYLGKAKIFSFDLIDANGGEIRATGLNSAID
LFYDKIVPGNVYLISGGLVKPVPKMLNPLNSDYQIILVPTTSIEIYSGDDSGIPGQKHNF
RQISEIENMENDAMVDLLGVVTSVSPSVTLVKNAFKTHKRTIHLKDMSGQAMAITLWGNS
CSAEGQQLELQLKYGLSPILSLKFGSVVSGFSGKSVCTTSSSQLKINPDLPEAQKLRQWY
ATQSKNNVCRTIAQIKENFGMLGQPDLITVVAAISYVRTDVFCYPACTLMFNDKQCNKKV
TANGDGWWCKSCLRSSETCDYRYLLLCQIQDHSGSSYATAFHEAAEEMIGHTAQELYMIQ
NNEQDAAKVEEIMRGVLWGKYLFKLRVKEGAQHGVKLGIVKAEKFDPSDMSRHVLGEIDN
LLKGNSSSASGTQGIVTPSVGRTNLQARLTARTSNNASGTETIGGTSLMIQ
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggggggcgaggcggaggtgaacctgacccacggggccgtggcggcgatgtcccggatg
gtgcaggggctgcggccggtgctgcagttgccggaggcgccgcggccaacctggatggtg
ggtggccacacggagctctacggcctcctgctctccgacggcgtgcactcccagaagggg
atgctcgccacctccttgaacggcctcgtcaaggctggcctcctccgcggcggctccgtc
gtccgcgtcctcgactacatctgcaacaactccgtcgagaacccgagggtcattgctgtc
atccaactggaaatactgcaaactgagtgcacgctgattgggagtcccacattctttgat
cctaatgtctctcaacctaagttgagatcatattctgatagcctgggcatccataggcat
tgtatgatctcaggggccgaacaaggtgttaccaacataggatgctatcctgaccagagc
ttgttggattcttctaatgctgcaagggtagagattatgcagcgaccttatgatttagtg
cccacaccaaacacaatagatgccaagatgcagcagctttcactgaaatcttatcagagc
caagttccttcaacagttggaggctttgacagtcctggcaatacttatgggcagcctgtg
cagtctttgtgtgaacaaacacctccaatgtatttgaatagataccctgtcgttaacagt
gaagctcatctcatcccaatttctgcgttaactccataccaaagcagatggacaatcaag
gtcagggtaactggaaagaccgaaccaggctacttaggcaaagcaaaaatcttctctttt
gatctgattgatgcaaatggtggagaaattcgtgcaacaggtttaaattctgccattgac
ctgttctacgacaaaattgtgcctggaaatgtgtacttgatatctggaggattggtaaaa
cctgtaccaaagatgcttaaccctttaaacagtgattatcagattattctggttcctaca
acatctatagaaatttattctggtgatgatagcggcatccctggacagaaacacaatttt
agacagatcagtgaaatagaaaatatggagaatgatgccatggtagatttgcttggggtt
gttacatcagttagtccttcagttacattagtaaagaatgccttcaaaacccataaaaga
accattcatctgaaggacatgagtggtcaggctatggcgataaccctctggggaaactct
tgtagtgctgaaggccagcagctggagctgcagttgaaatatggtttgagccctatactt
tccttgaagtttggcagtgttgtcagcggattcagtggcaagtctgtgtgcacaaccagc
tcaagtcagctaaaaataaacccagacttacctgaggcacaaaagctgaggcaatggtat
gcaactcagtcgaagaacaatgtttgcagaaccattgcgcagatcaaggagaactttggg
atgctaggtcaacctgacttgatcactgttgtggctgcaatttcgtatgtgcgcactgat
gtcttctgctacccagcttgcaccttgatgtttaatgataagcaatgcaacaaaaaagtc
acagctaatggtgatgggtggtggtgcaagagttgcctccggagctccgaaacttgtgac
tataggtacttgcttctgtgtcagatccaagaccacagtggttcttcctacgctactgcc
ttccatgaggcggctgaggagatgattggccataccgcacaagagctttatatgatacaa
aataacgagcaagatgctgcaaaagtcgaggaaatcatgcggggggtcctttggggtaaa
tacctgttcaagttgagagtcaaggagggagcccagcacggtgtgaagctcggcatagtt
aaggctgagaagttcgacccgtcggatatgagtcgtcatgtcctgggagagatcgacaac
cttttgaagggcaattcatcctcagcttcagggacacaaggcatcgtgaccccaagtgtc
ggtcgcacaaatttgcaggccaggctaactgctcgaacctccaacaacgcctctggcacc
gagactatcggtggcacaagtttgatgatccagtag
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integrated database retrieval system
