Lolium rigidum (rigid ryegrass): 124647196
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Entry
124647196 CDS
T09103
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03030
DNA replication
lrd03420
Nucleotide excision repair
lrd03430
Mismatch repair
lrd03440
Homologous recombination
lrd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124647196
03420 Nucleotide excision repair
124647196
03430 Mismatch repair
124647196
03440 Homologous recombination
124647196
03460 Fanconi anemia pathway
124647196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124647196
03032 DNA replication proteins [BR:
lrd03032
]
124647196
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124647196
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124647196
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124647196
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124647196
MMR (mismatch excision repair)
124647196
DSBR (double strand breaks repair)
HR (homologous recombination)
124647196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
RMI1_C
Motif
Other DBs
NCBI-GeneID:
124647196
NCBI-ProteinID:
XP_047043122
LinkDB
All DBs
Position
4:66755212..66758969
Genome browser
AA seq
738 aa
AA seq
DB search
MGGGMEADLTHGAVEAMSRPAARLRPVLQVVCGPTARGNGVPRYRVLLSDGMHSQQAILP
TSVNGLVSTGRLRDGSVVRVLDYVSQSAYCGRVITVIQLEILQTECTLIGSPKIYQGLFC
SSVAAREEHAVNPFYGPLLTQNTTNAKMQQLSLNSHQGKNPVVPPFGFSLGRPDNTCGRP
EQSLYQQQPLVYMNRGPVVNNDAPFYVTPIAALNPYQGRWTIKGRVTAKTDIRHFGAGKV
FSFDLLDAQGGEIRAICFNSAVDQFSEQIVVGNVYLITGGLLKPAQKFNHLSHAYEVVLD
TSASVAIGSSDDSGIPWQQYNFQLINEIQNLHNGDMIDLLGVVTSVNPSVTVMRKDGTET
QKRSLQLKDMSGCCVEITLWGNVCNAEGQLLYSMCVSGFDPVLALKGGRVHEFSGKTVDT
ISSSLLKVNPDLPEAERLVQWYITEGEFGVCTSLSQEILVVNKTIAHIKEEALGRSDKPD
WITVEGTISHISTERFSYPSCTRELDGKRCYRKVTHNGDGTWHCPKCEQSSQNCEQRYLL
QCKIEDRTGTTVATAFQAAGEEILGLTAQELFTIKNVSQDAAQFAEIIKRACSQLYLLKL
KIKEEVYGDEMRVKVSIAKAERLDVTLKQSSVPRASHILSDDGLGLRAAVSVRNCPAVMD
MQKPAAGGGFAASSCCYRPPNAGSDPCFKQSNLVSLSTSPESFHGRLHVMPLQQAPPPSD
VISLGHYSLKNGRPGHFA
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggggggagggatggaggcggacctgacccacggcgccgtggaggccatgtcgcggccg
gcggcaaggctgcggccggtgctgcaggtggtgtgcggccccaccgcccggggcaacggc
gtgccgcggtaccgggtcctgctctccgatggcatgcactcccagcaggccatcctcccg
acctccgtcaacggcctcgtctccaccggccggctccgcgacggctccgtcgtgcgcgtc
ctcgactacgtctcccagtccgcctactgcggaagggtcatcactgttatccaacttgaa
atactgcaaactgagtgcacattgattggcagtcccaaaatttatcagggtctgttctgc
tcttctgttgctgcaagggaagaacatgccgtgaacccattttatggtccactgctgaca
caaaatacaacaaatgccaagatgcagcagctttcactgaactctcatcaagggaaaaat
cctgtggttcctccctttggttttagccttggccgtcctgacaatacttgtgggcgccct
gaacagtctttgtatcagcaacaacctctggtgtatatgaatagaggtcctgttgttaat
aatgacgcgccattttatgtcaccccgattgctgcgttgaacccataccaaggaagatgg
acaatcaagggcagggtgactgcaaagactgatatccggcactttggtgcagggaaagtc
ttctcctttgatctccttgatgcgcagggtggagaaattcgtgcaatatgtttcaattca
gcagttgatcagttttctgagcaaattgtggttggaaatgtgtacttgataactggagga
ttgcttaaacctgcacagaagttcaaccatttaagccatgcgtacgaagtggtactggat
acttcagcgtctgtagcaattggctccagtgatgatagtggcatcccttggcagcaatac
aatttccaactgatcaatgaaatacaaaatctgcataacggagatatgatagatttgctt
ggagttgttacgtcagttaacccttctgtcacagtaatgcggaaggatggtacggaaacc
cagaaaagatcccttcaactgaaggacatgtctggttgctgtgtggaaataactctttgg
gggaatgtctgtaatgctgaaggtcagctgttgtactcgatgtgtgtttctggatttgat
cctgtacttgctctgaaaggtggccgtgtccatgaattcagtggcaaaactgtggacaca
atcagctcaagcttgttaaaagtaaatccggacttgcctgaggcagaaaggctggtgcag
tggtacataactgaaggagaatttggtgtttgtacttctttatctcaggaaatcttagtc
gtgaacaaaacaattgcacatatcaaggaagaagctctagggcgatcagataagccagat
tggataactgttgaaggtacaatttcacacatcagcaccgagaggttttcttatccatct
tgcaccagggagcttgatggtaagcgctgctacagaaaggttactcataatggtgatggg
acgtggcattgtcccaaatgcgagcagagctctcaaaactgcgagcagaggtacttgttg
cagtgcaagattgaggatcgcactgggacaaccgttgctactgcattccaagcggctggc
gaggaaatacttggcctcacagcacaagagcttttcacgataaagaatgtgtctcaagat
gccgcacaattcgcagaaataataaagagggcctgttctcagctatacctattaaagctg
aaaatcaaggaagaagtctatggtgacgagatgcgtgtgaaagtcagcatcgctaaagct
gaaagattggatgtcaccctgaaacagagttctgttcccagagcatctcatatcctttca
gatgatggcttaggcctgagggcggcggtgagtgtgcggaactgccccgcagtcatggat
atgcagaaaccagcagctggagggggcttcgctgctagttcatgctgttataggcctcct
aacgctggctcagacccatgcttcaaacaatcaaacctggtcagcctgagcacatcccca
gagagtttccacggaaggctacatgtgatgcctcttcagcaggcaccaccaccttcagat
gtgatcagtcttggccattattcactaaaaaatggtcggcctgggcacttcgcttga
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