Lolium rigidum (rigid ryegrass): 124647456
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Entry
124647456 CDS
T09103
Name
(RefSeq) polygalacturonase ADPG1-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124647456
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
124647456
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Beta_helix
Motif
Other DBs
NCBI-GeneID:
124647456
NCBI-ProteinID:
XP_047043356
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Position
4:120620241..120622487
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AA seq
516 aa
AA seq
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MDSPSRDLAQEEILEGIIHDAPDVEPAESPSSYLNPSRDGMEVDLREDEADGFDDGEGDS
SDDGEGYNSDDEEADLTENAPLLSKCQATKSSVFGLRGGMHTESVHRRLGERSVKADTLS
NRPVQRHRKLGQETKPPPDAEFNVVSYGAVGDSKTDDTPAFRKAWAAACSSSKPATMLVP
KEKEFLVKQTTFSGQCKSSVRFKLDGMLVAPERSSWPKENMNKWIMFNNVDKLTVSGEGT
MDGKGEVWWKNSCRIDKNLKCTEAPTALLLSKCNHLKVENIRLLNSQQMHMSVEDCKDVV
LKHITIVAPGDSPNTDGIHIARTKDIQVMDCNIKTGDDCMSIETGTENLYASKITCGPGH
GISVGSLGDKNSEARVSNITINKAHLIGTTNGARIKSWQGGKGYAKDITFEDIIMDKVKN
PIIIDQNYCYMDDPLQPKACKKQTSAVELSNIQFKNIRGTSGTKEAIKLDCSDTIPCHDL
VMQDVKLTFSGHGKGATSTCKNAKLKKSDNVIPKTC
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggattcacctagcagagacctagcacaggaagaaattctcgagggtataatccacgac
gcccccgatgttgaaccagctgaatctccgtcgtcgtatctgaatccctctagggatgga
atggaggtcgacctccgtgaggatgaagccgacggcttcgatgatggagaaggcgatagc
tccgatgatggcgaaggctataactccgatgatgaagaagccgatttaactgaaaatgcg
cctctgttgtcaaagtgtcaggcaacaaaatcttcagtatttggtctgagaggcggcatg
catacagagtccgtgcaccgcagactaggagagaggagcgtcaaggccgatacgctaagc
aacagacctgtccagcgacatcgcaaacttggtcaagagaccaagcctcctccggacgcc
gagttcaacgtggttagctacggagccgttggcgatagcaaaactgatgacaccccggcg
tttcggaaagcctgggccgcggcctgctcatcgtctaagccagccaccatgttggttccg
aaggagaaggaatttcttgtcaagcagaccaccttctcggggcagtgcaagtcgagcgtc
agattcaagctcgacggaatgttggtagctcccgaacgatcatcttggccgaaggagaac
atgaataagtggattatgtttaacaacgttgataagctaaccgtgtcgggcgaagggact
atggacgggaaaggtgaagtatggtggaagaactcgtgccgaatcgacaagaacctcaag
tgtacagaggcccccacggcgttgttgctcagcaagtgcaatcacttgaaggtagaaaat
atcaggctcttaaacagccaacaaatgcatatgtccgtcgaagattgcaaggacgtagtt
ctaaagcatatcacgattgttgcgcccggagacagccctaataccgatggcatccacatt
gcccgcacaaaggatatacaagtcatggattgcaacattaaaactggagatgattgcatg
tctatcgagaccggaactgagaacttgtacgcctcaaagataacatgcggcccgggtcat
ggaatcagcgtcggaagcttaggtgacaaaaattctgaagctcgtgtttccaacataact
atcaacaaagcacaccttattggcacgacgaatggtgcacgcataaagtcgtggcaagga
ggaaagggatatgccaaggacatcacatttgaggatatcatcatggacaaggtcaagaat
ccaataatcattgaccaaaattattgctatatggatgatcctttgcagcccaaggcatgc
aagaaacaaacttcggcggtggagctaagtaatatccagttcaagaatataagaggcacg
agtggaacaaaagaggctatcaagctagactgcagcgacaccatcccatgccatgatcta
gtgatgcaggatgtaaaacttacctttagcgggcatggcaaaggtgctacaagtacatgc
aagaacgctaagctaaagaaatcggacaatgtcattccaaaaacatgctga
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