Lolium rigidum (rigid ryegrass): 124647457
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Entry
124647457 CDS
T09103
Name
(RefSeq) polygalacturonase ADPG1-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124647457
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
124647457
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
124647457
NCBI-ProteinID:
XP_047043357
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Position
4:120632075..120633415
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AA seq
446 aa
AA seq
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MASRKVVLAMLFLLLLFIFPAIAFAFTGGMHTESMHRRLGERSVKADTLSHRPVQRHRKL
GQETKPPQDAEFNVVSYGAVGDGKTDDTPAFRKAWAAACSSSKPATMLVPKEKEFLVKQT
TFSGQCKSSVRFKLDGTLVAPERSSWPKENMNKWIMFNNVDKLTVSGEGTMDGKGEVWWK
NSCRIDKNLKCTEAPTALLLSKCNHLKVENIRLLNSQQMHMSVEDCKDVVLKHITIVAPG
DSPNTDGIHIARTKDIQVMDCNIKTGDDCMSIETGTENLYASKITCGPGHGISVGSLGDK
NSEARVSNITINKAHLIGTTNGARIKSWQGGKGYAKDITFEDIIMDKVKNPIIIDQNYCY
MDDPLQPKACKKQTSAVELSNIQFKNIRGTSRTKEAIKLDCSDTIPCHDLVMQDVKLTFS
GKGKGATSTCKNAKLKKSYNVIPKTC
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcatctcgcaaggtcgtcctggcaatgcttttcctgctgttattgttcatcttcccg
gcaattgcctttgcatttacaggcggcatgcatacagagtccatgcaccgcagactggga
gagaggagcgtcaaggccgatacgctaagccacagacctgtccagcgacatcgcaaactt
ggtcaagagaccaagcctcctcaggacgcggagttcaacgtggttagctacggagccgtt
ggcgatggcaaaactgatgacaccccggcgtttcggaaagcctgggccgcggcctgctca
tcgtctaagccagccaccatgttggttccgaaggagaaggaatttctcgtcaagcagacc
accttctcggggcagtgcaagtcgagcgtcagattcaagctcgacggaacgttggtagct
cccgaacgatcatcttggccgaaggagaacatgaataagtggattatgtttaacaacgtt
gataagctaaccgtgtcgggcgaagggactatggacgggaaaggtgaagtatggtggaag
aactcgtgccgaatcgacaagaacctcaagtgtacagaggcccccacggcgttgttgctc
agcaagtgcaatcacttgaaggtagaaaatatcaggctcttaaacagccagcaaatgcat
atgtccgtggaagattgcaaggacgtagttctaaagcatatcacgatcgttgcgcccgga
gacagccctaataccgatggcatccacattgcccgcacgaaggatatacaagtcatggat
tgcaacattaaaactggagacgattgcatgtctatcgagactggaactgagaacttgtac
gcctcaaagataacatgcggcccgggtcacggaatcagtgtcggaagcttaggtgacaaa
aattctgaagctcgtgtttccaacataactatcaacaaagcacaccttattggcacgaca
aatggtgcacgcataaagtcgtggcaaggaggaaagggatatgccaaggacatcacattt
gaggatatcatcatggacaaggtcaagaatccaataatcattgaccaaaattattgctat
atggacgatcctttgcagcccaaggcatgcaagaaacaaacttcggcggtggagctaagt
aatatccagttcaagaatataagaggcacgagtagaacaaaagaggctatcaagctagac
tgcagtgacaccatcccatgccatgatctagtgatgcaggatgtaaaacttaccttcagc
gggaaaggcaaaggtgctacaagtacatgcaagaacgctaagctaaagaaatcatacaat
gtcattccaaaaacatgctga
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