Lolium rigidum (rigid ryegrass): 124647458
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Entry
124647458 CDS
T09103
Name
(RefSeq) polygalacturonase QRT2-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124647458
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
124647458
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Beta_helix
Motif
Other DBs
NCBI-GeneID:
124647458
NCBI-ProteinID:
XP_047043358
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Position
4:120880770..120882110
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AA seq
446 aa
AA seq
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MASRKVVLAVLFLLLLFIFPAIAFALTGGMHTESVHRRLGERSVKADTLNDRPVQRHRKL
GQETKAPQDAEFNVVSYGAVGNGKTDDTPAFRKAWAAACSSSKPATMLVPKEKEFLVKQT
TFSGQCKSSVRFKLDGTLVAPERSSWPKENMNKWIMFNNVDKLTVSGEGTMDGKGEVWWK
NSCRIDKNLKCTEAPTALLLSKCNHLKVENIRLLNSQQMHMSVEDCKDVVLKHITIVAPG
DSPNTDGIHIARTKDIQVMDCNIKTGDDCMSIETGTENLYASKITCGPGHGISVGSLGDK
NSEARVSNITINKAHLIGTTNGARIKSWQGGKGYAKDITFEDIIMDKVKNPIIIDQNYCY
MDDPLQPKACKKQTSAVELSNIQFKNIRGTSGTKEAIKLDCSDTIPCHDLVMQDVKLTFS
GKGKGATSTCKNAKLKKSDNVIPKTC
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcatctcgcaaggtcgtcctggcagtgcttttcctgctgttattgttcatcttcccg
gcaattgcctttgcattaacaggcggcatgcatacagagtccgtgcaccgcagactggga
gagaggagcgtcaaggccgatacgctaaacgacagacctgtccagcgacatcgcaaactt
ggtcaagagaccaaggctcctcaggacgcggagttcaacgtggttagctacggagccgtt
ggcaatggcaaaactgatgacaccccggcgtttcggaaagcctgggccgcggcctgctca
tcgtctaagccagccaccatgttggttccgaaggagaaggaatttctcgtcaagcagacc
accttctcggggcagtgcaagtcgagcgtcagattcaagctcgacggaacgttggtagct
cccgaacgatcatcttggccgaaggagaacatgaataagtggattatgtttaacaacgtt
gataagctaaccgtgtcgggtgaagggactatggacgggaaaggtgaagtatggtggaag
aactcgtgccgaatcgacaagaacctcaagtgtacagaggcccccacggcgttgttgctc
agcaagtgcaatcacttgaaggtagaaaatatcaggctcttaaacagccagcaaatgcat
atgtccgtggaagattgcaaggacgtagttctaaagcatatcacgatcgttgcgcccgga
gacagccctaataccgatggcatccacattgcccgcacgaaggatatacaagtcatggat
tgcaacattaaaactggagacgattgcatgtctatcgagactggaactgagaacttgtac
gcctcaaagataacatgcggcccgggtcacggaatcagtgtcggaagcttaggtgacaaa
aattctgaagctcgtgtttccaacataactatcaacaaagcacaccttattggcacgacg
aatggtgcacgcataaagtcgtggcaaggaggaaagggatatgccaaggacatcacattt
gaggatatcatcatggacaaggtcaagaatccaataatcattgaccaaaattattgctat
atggacgatcctttgcagcccaaggcatgcaagaaacaaacttcggcggtggagctaagt
aatatccagttcaagaatataagaggcacgagtgggacaaaagaggctatcaagctagac
tgcagtgacaccatcccatgccatgatctagtgatgcaggatgtaaaacttaccttcagc
gggaaaggcaaaggtgctacaagtacatgcaagaacgctaagctaaagaaatcagacaat
gtcattccaaaaacatgctga
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