Lolium rigidum (rigid ryegrass): 124648491
Help
Entry
124648491 CDS
T09103
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
124648491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124648491
03036 Chromosome and associated proteins [BR:
lrd03036
]
124648491
Enzymes [BR:
lrd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124648491
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124648491
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
124648491
Noncanonical PRC1 (PRC1.1)
124648491
Noncanonical PRC1 (PRC1.3/1.5)
124648491
Noncanonical PRC1 (PRC1.6)
124648491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-UDP
zf-RING_4
zf-RING_10
zf-rbx1
zf-RING_6
zf-Nse
zf-RING_11
TRAF3_RING
ZNF512_C2HC
Motif
Other DBs
NCBI-GeneID:
124648491
NCBI-ProteinID:
XP_047044206
LinkDB
All DBs
Position
4:241457175..241461917
Genome browser
AA seq
500 aa
AA seq
DB search
MPAQKRPHPSSAGAAPVQPHVQDQATGVAGCGAEPNGNGNAVGTPNGAAPELAKEARRER
ERDDGDSDAGEEQEQDQRDDEEGGGGGNDDQDRDDDDDSQSSQSDGADMDEFILVKLMDI
RKEVQCPICLGIIRKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCKSRRSLRDDPN
FDALILALYPDIDKYEEEELAFGEEEKTRNKKIQESIAETYRRQSEALVKKRSTAKAIAT
SRKTRGNMRTKRRGRNSSPDIAPTDIDEEEEREENGNEGSKESSSVDDRSPEVKVKRARR
WPVPRSSPAKIAGSVESSYEENDDMGGARDILATSPLRGEMLAWGKNGTRSQTRHGSAGG
SSGRMVKGGRVAKLVDHLRNADEFDSKLNLYLVLAPIDGQSMPKLEKPYLSCQPTFSVRH
LCQFVALQLSRQAKEVEIYFRKNSRDGSFAIEETGTDEAMLDRFDGLERLKEEKSLSELY
PSFASGAGDLELLYSLKTQG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgcagaagcgcccgcacccgtcctccgctggcgccgccccggtccaaccccac
gtccaggaccaagctacaggggtggccggctgcggcgcggaacccaacggcaacggcaac
gccgtggggacgcccaacggagccgctcccgagctggccaaggaggcgcgccgcgagcgc
gagcgcgacgacggcgattccgatgcgggggaggagcaggagcaggaccagcgggacgac
gaggaaggcggcggcggcgggaacgacgaccaagaccgcgacgacgacgacgacagccag
tcgtcgcagagcgacggcgccgacatggacgagttcatactagtgaaattaatggatata
cggaaggaagtgcagtgccctatatgcttaggcattatccgcaaaacaagaacggttatg
gagtgtttgcaccggttttgtagggattgcattgataaatccatgcggcttggaaataat
gaatgcccggcatgccgcactcattgcaagagcagacgttccttgagggatgatcctaac
tttgacgctttaattttagctttatatccagatattgacaagtacgaggaagaggaactt
gcttttggtgaggaggagaagactcgcaacaaaaagattcaagaatccattgctgaaaca
taccgaagacagtcagaagcacttgtgaagaaacgctccactgcaaaagcaatagctaca
tcaagaaagactcgggggaatatgcggacaaagaggagaggacggaatagttctcctgat
attgccccgactgacattgatgaggaggaggagagagaagaaaatggcaatgagggcagc
aaagaatcgtcttctgttgatgaccgttcaccagaagtaaaggttaaaagagctcggaga
tggcctgtgccacgatcatcccctgctaagattgctggcagtgtcgagagtagctacgag
gagaatgatgatatgggaggtgccagagatatcttggctacttctccgctgcgtggagag
atgcttgcctggggcaaaaatggcacccgcagtcaaactcgacatggcagtgccggtggc
tccagtggaaggatggtcaagggtgggcgtgttgccaagttggtggatcatctccgtaat
gctgatgagtttgatagtaagctcaacctgtatcttgtcctggctccaattgatggacaa
agtatgccgaaactggagaagccctacctcagttgccagccaacgttctcagttcgtcat
ctctgccagttcgttgctcttcagctgtcccggcaagccaaggaagtggagatttacttc
aggaagaactccagagacggatcctttgcaatagaagagaccggtacagacgaggcaatg
ctggatcggttcgatggcctggaaaggttgaaggaagagaaatctctttcggagctttac
ccttcgttcgcctccggtgctggggacctggagctgctgtactccctgaagacacaaggg
tag
DBGET
integrated database retrieval system
