Lolium rigidum (rigid ryegrass): 124648621
Help
Entry
124648621 CDS
T09103
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3b-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lrd03036
]
124648621
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124648621
microRNA pathway
RISC loading complex
124648621
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
dsrm
DND1_DSRM
SWI2_SNF2
AAA_22
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
124648621
NCBI-ProteinID:
XP_047044303
LinkDB
All DBs
Position
4:complement(256360213..256371265)
Genome browser
AA seq
1669 aa
AA seq
DB search
MANDDDPTHLPPPPPLPPPRRPHKQLHPRRSREDSHSLSPHPFRYSALPVSGACICTYQV
EVFEAALQGNTIAVLDTGSGKTMVAVMLARDHVRRVRAGEAPRRIVLFLAPTVHLVHQQF
EVIREYTDLDATECYGASGVAEWTAEQWKEQVGSKEIAVMTPQILLDALRHAFVTMSAVS
LLIFDECHRACGNHPYTRVMKEFYIGSQWRPAVFGMTASPVATKGTSTIQDCEAHIAQLE
LTLDAKVISPSSNSFTLNFIEPLENPFRNDKXYPYLTAIQVYIIQDRSELESFSPPATIV
NKFYDAYLIDFEDLKSKLQTLYEEFDALLVSLEESSPNKFEDTNNILETSRKTLSRYHGK
IFYSLNYLGPIITAKVVKIYNESIKTLGDSEDCLFSKASFNLHESYFKEALYLIEEVLPQ
GYEELMKSDSGSAHLSKRGSSNEVICLIFVDRIMTARAVERFMRGIVNFSSFSISYLTGG
STSKDSLSPAVQRFTLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIRFDLPRTVCSYVQS
RGRARRSNSNYVLMIERGNMEQQERIFRIIQTEYYIKHFALYRSPNVSSSNSPMQENYIY
HVDSTGATITAECCVNLIRKYCEKLPKDRYYMPKPSFEVSVEDGSYQCTLTLPPNAAFPR
IVGPLCSTCNLAKQLVSLEACKKLHQLGELNDHLVVPIIEEPMDNDTALTYGKFISGPGT
TKRKELHGTTNVLALSGSWIHESENVMLNTYRFDFVCDQEGENYAGFVLLMESALDDDVA
SSKMDLFLIPNKMVYTTVTPCGKVQLNRKQLREGKLFQEFFFNGIFGRLFHGSRTSGVQR
EFLFRKGHEIQWSSESMYLLLPLRHSPPIQQDLSIHWEAVESCTQAVEQLRNLYMEDGNL
HAHFIQDRSIKGEDIIHLANKSLHFSTIKDSVVLSLHTGRIYNVLDLIHDTTAEDSFEEM
YNGKASPFSSFVEYYHEKYGIIIRHPNQPLLLLKQSHNPHNLLFSKSKYIDDSTGDPLLM
EKEQIHARVPPELLIHIDVTIEILKSFYLLPSVMHRLQSLMLASQLRRDIGYTQHIPNHL
ILEAITTLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSMAVCNATL
HKHGIWRSLQGYVRDSAFDPRRWVAPGQISLRPFPCNCGIETAFVPTNGRYITNDPSFVV
GKPCDRAHRWMCSKTISDCVEALVGAYYVGGGIVAALWVMRWFGIEIKCDRKLVQEVKLN
ASYICYLPKIRDIEELEAKLKYTFSVKGLLLEAITHPSLQESGVDYCYQRLEFLGDSVLD
LLITRYLYVTHTDVDPGELTDLRSALVSNENFAQVVVRNNVHSHLKHGSGILLEQITEYV
RSNSECQGKDNEFLQHATSKVPKVLGDIMESIAGAIFVDSDFNVDLIWKIVEPLLSPMIT
PDNLALPPYRELLELCSHLGYFINSKCSSKGEEVIIDMSVQLRDELLIAQGHDRNKKSAK
AKAAARILADLKKRGLSIKQCLSKAKQLDVISSNLQSHLTSLESPLDYSDMNDYSSLGGL
SSLKEAVVLTLKMDKGGPRSALFKLCKRLQWPMPEFEFVEQRFRTPIVLDGVTTTNFNSF
VSTITLHVPDVTAITLEGERRTDKKASQDSASLIMLHKLQELKVCICKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgacgacgaccccacccacctccccccgccgccgccgctgccgccgcctcgc
cgcccccacaagcagctccacccgaggaggtcgcgggaggactcccattccctctcccca
catccatttcgctattccgcgctgccggtttctggcgcctgcatctgtacgtaccaggtg
gaggtgttcgaggccgcgctgcaggggaacaccatcgccgtgctcgacaccggctccggg
aagaccatggtcgccgtcatgctcgcgcgcgaccacgtgcgccgcgtgcgcgccggggag
gcgccccgccgcatcgtgctgttcctcgcgcccaccgtgcacctcgtacaccagcaattc
gaggtgattcgggagtacacggacctcgacgccaccgagtgctacggagcgtccggggtc
gccgagtggaccgccgagcagtggaaggagcaagtcgggagcaaggagattgctgttatg
acgccacagatactcttggatgctctcaggcatgcctttgtaacaatgagcgcagtgagc
ttgctaatatttgatgaatgccatcgtgcctgcggaaaccacccatatacaagagtaatg
aaggaattttacattggctctcagtggaggcctgctgtatttggaatgacagcatctcct
gttgctaccaaaggcacttccacaatacaagattgtgaagcgcacattgctcaacttgaa
cttacattggatgccaaggttatctcaccatccagtaattctttcactttgaactttatt
gagcctttggaaaacccatttcgcaatgataaatgatatccatatcttacagccattcag
gtatacatcatacaagatcggagtgaacttgagagcttttcccctcctgcaacaattgtg
aataaattctatgatgcttacttgattgattttgaagatctgaaatcaaagctacagaca
ttgtatgaagagtttgatgctttgttggtcagtctggaagaatcatcgccaaataaattt
gaagataccaacaacatattagagacatcaagaaaaactttgtccagataccatgggaag
atattttacagcctaaattatctaggcccaatcataaccgccaaggtagtgaagatatat
aatgaaagcatcaagacacttggtgattctgaagattgcctcttctctaaagctagcttc
aacctacacgagtcttattttaaggaagccttatatttgatagaggaagttctgccacaa
ggttatgaagaactaatgaaatcagattctggttctgcgcatttaagtaaaagggggtca
tcaaacgaggtgatttgcctaatttttgtagatagaattatgacagctagagctgttgag
aggttcatgagaggaattgtaaatttctctagtttttcaatttcttacttgactggaggg
agtacgtcaaaagattctctgagcccagcagtgcagaggtttactctggatttgttccga
gctggaaaggtaaacctgcttttcactacagatgtgacagaagagggtattgatgtacca
aactgttcttgtgtcatacgctttgacctgcccagaactgtttgtagctacgtccaatct
cgtggtcgtgccagaaggagcaactcaaattatgttctaatgattgagaggggaaatatg
gagcagcaggaacgcatattccgtattatacagactgagtactatattaaacattttgct
ctttacagaagccccaatgtttcatcctctaattctcctatgcaagagaactacatatac
catgttgattcaacaggagcaactataactgcagagtgctgtgtcaatctaattcgtaaa
tactgtgagaaacttcctaaagatagatattacatgccaaagccttcctttgaggtgtct
gtcgaagatggatcatatcaatgtaccttgactctacctccaaatgcggcatttccaagg
atagttggccccttatgcagtacatgtaatttagccaagcagcttgtatccctagaggca
tgcaagaaacttcatcagctgggagaacttaacgatcatcttgttgtacccataattgaa
gaacctatggataatgatactgctttgacctatgggaaattcatttcaggaccaggaaca
actaaaagaaaggagctccatggaacaacaaatgttcttgctctgtcaggatcgtggatt
catgaaagtgaaaatgtcatgctgaatacttatagatttgattttgtttgcgaccaagaa
ggtgaaaattatgctgggtttgttttgttaatggagtcggcacttgatgatgatgtagca
tcttcaaaaatggatctcttcctgatccctaataaaatggtctataccacggtaacacct
tgtggaaaagttcaactgaacagaaagcagctacgtgaagggaagttgttccaagaattc
tttttcaatggaatattcggcagactattccatggttctcggacaagtggagtgcaaagg
gaatttcttttcagaaaaggacatgaaatacaatggagctcagagagcatgtacttgctt
ttacctttgaggcattcaccacctatccagcaagatctaagcatacattgggaggcagtt
gaatcctgcacccaggcggtggagcagttgagaaatttgtatatggaagatggaaatctt
cacgcacattttattcaagacagaagtatcaagggagaagacattattcatttggccaac
aaatctcttcatttttccaccataaaagattcagttgtgctatcgcttcatactgggagg
atatacaatgttcttgacttgatccatgacacaactgctgaggactcatttgaggagatg
tataatgggaaagcttcaccattttcttcattcgtggaatactaccatgaaaagtatggt
attattattcgacatccaaatcaaccattgttgttgctaaagcaaagccacaatccacac
aatcttcttttttcaaaatcaaagtacatagatgattctacgggcgatcctttgctcatg
gaaaaagaacaaatacacgcccgagtcccacctgaactattaatccacattgacgtgaca
attgaaattctcaaatcgttttatttattgccttctgtaatgcatcgacttcagtctctc
atgctagccagccagcttcgcagagatattggttatactcaacacataccaaatcacctg
attttggaagctatcacaactttaagatgctgtgagacattttccctggagcgtttagaa
ctattgggagactcggtactaaagtatgtgataggatgtgacctttttttaaggtatcca
atgaaacatgaaggtcatctttctgatatgagatccatggctgtctgcaatgctacactt
cataaacatggaatatggcgatccttgcagggttatgtacgggatagtgcatttgaccca
cggcgttgggttgctcctggacagatatcattgcgcccttttccttgtaactgcgggatt
gagactgcatttgttccaactaatggaagatatatcacaaacgacccatcttttgtcgtt
ggaaaaccatgtgatagagctcacagatggatgtgctcaaaaacgatatctgattgtgtt
gaagccctagttggagcatattatgttggtggtggcattgttgctgcactttgggttatg
aggtggtttggtattgaaatcaaatgtgatagaaagttggtacaagaagtaaagcttaat
gcatcttatatatgctacttacctaaaataagggatattgaggagttggaagcaaaactg
aagtacaccttctctgtcaaaggccttctactggaagccataactcatccatctctgcag
gaatcaggggttgactactgttaccagcgtttggaatttctgggtgattctgttttggat
ctactaattacacggtatctctatgttacccacactgatgttgatcctggtgaattaact
gacttacgttccgctttggttagtaatgaaaattttgcgcaagttgttgtaagaaacaat
gttcacagccatctgaagcatgggtctggaatacttttagagcaaattacagaatatgtt
aggtccaattcagagtgccaagggaaggataatgaattccttcaacatgctacatctaaa
gtacctaaggtacttggagacattatggaaagcattgccggcgcaatatttgtagactca
gattttaatgttgatttaatttggaagattgttgaaccgttgctttctccaatgattaca
cctgataatcttgcattgccaccttatcgggagctgctagagttatgtagtcaccttggt
tatttcataaattcaaaatgcagtagtaaaggagaagaggtaattatagatatgtcagtg
caattacgagatgaactgctgatagcccaaggacatgacagaaataagaagagtgcaaag
gcaaaagcagcagctcgtattctggcagatctaaagaaacggggtctttcaatcaaacaa
tgtttatccaaggctaagcagctggacgttatatcttcgaacctgcagtctcacttgaca
agtttagaatcaccacttgattattctgatatgaatgactattctagcctgggaggtctg
tcctcactgaaagaagcagttgttcttacgctcaaaatggataaaggtggaccaagaagt
gctctttttaagctatgcaagaggttgcagtggccaatgccagaatttgaatttgtggaa
caacggtttaggactcctattgttctggacggggtaaccacaacgaacttcaatagcttc
gtttcaaccatcaccttgcacgtacctgatgtaacagccattacacttgaaggcgagcgg
cgtactgacaaaaaggcttctcaggattcagcatcgttgataatgctccacaagcttcag
gagctcaaggtctgtatatgtaagacttag
DBGET
integrated database retrieval system
