Lolium rigidum (rigid ryegrass): 124648908
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Entry
124648908 CDS
T09103
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03022
Basal transcription factors
lrd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124648908
09124 Replication and repair
03420 Nucleotide excision repair
124648908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124648908
03036 Chromosome and associated proteins [BR:
lrd03036
]
124648908
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124648908
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124648908
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124648908
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124648908
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124648908
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
NAMPT_N
AAA_11
Nitrate_red_del
Pinin_SDK_N
Motif
Other DBs
NCBI-GeneID:
124648908
NCBI-ProteinID:
XP_047044546
LinkDB
All DBs
Position
4:17929241..17934989
Genome browser
AA seq
758 aa
AA seq
DB search
MRFDLDGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS
LANPSRPLRLLYCTRTVHEMEKTLSELRLLFSHLPPAAARSLLALGLSSRKNLCVHPQAS
ASAARDSVDTACRRLTASWVREKAASDPESTPLCEYFETFDRAAAAGDLASFMPPGVYTL
ADLRSLGRERRICPYYLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRIDQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPSLPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVSF
VASIHSQAGIDQRMLRFCYDRLQSLLLTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDDRMPNVRDPVIQLSCHDASLAIQPVFDRFQTVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWNDMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILRARLEYLRETFQIQEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHTA
REFLRRMAQPYDKAGSGGQKTLLTEEDLQDMGRDAMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcgatctggatggcctgacggtgcacttcccgtacgcggcgatctacccggag
cagcacgcgtacatgggtgagctgaagcgcgccctggacgcgcgcggccacgcgctgctg
gagatgccgacgggcacgggcaagacggcggcgctcatctccctcatcacctcctactcc
ctcgccaacccctcccgcccgctccgcctcctctactgcacccgcaccgtccacgagatg
gagaagaccctctccgagctccgcctcctcttctcccacctcccgcccgccgccgcgcgc
tccctcctcgcgctcggcctctcctcccgcaagaacctctgcgtccacccgcaggcgtcc
gcctccgccgcgcgcgactccgtcgacaccgcctgccgccgcctcaccgcgtcctgggtc
cgggagaaggccgcctccgacccggagtccaccccgctctgcgagtacttcgagacattc
gaccgcgccgctgccgccggcgacctcgcctccttcatgccgcccggggtctacaccctc
gccgacctccgctcgctcggccgcgagcgccggatatgcccctactacctcgccaggcag
atggtcaagtacgccaatgtggtggtctacagctaccaatacctgctcgaccccaaggtg
gccagcatcgtgtcccgggagatgcagaaggagtgcgtggtcgtcttcgatgaggcgcac
aacatcgacaacgtctgcatcgaggcgctcagcgtcagcatccgcaagcagacgctcgaa
ggggccgagcgaaacctgcggcgcatcgatcaagagattgataggttcaaggccaccgat
gccaataggcttcgtgctgaatacaatcgacttgtggatggattggcacagaggggaaat
ctgccaatatcggatgcttggcttgcaaatccatccttgcctgatgacatcctgaaggag
gctgtgcctggaaacatcaggagggctgagcattttctcgctgtcttgcggagactcgtg
aggttcttagatggccgcctggaaacggagaatgttgagaatgagatgcctgtttccttt
gttgcttcaatacattcccaggctggaattgaccagagaatgctgagattttgttatgac
cgcttacagtctctgctgcttaccttggagataaccgatacagatgaattcatgcacatt
cagaccatctgtgacttcgccacattgatcggaacttatacacggggattttctataata
attgaaccctatgatgatagaatgcctaacgttcgtgatcctgtgattcagctcagttgc
catgacgcttcactcgcaatacagcccgttttcgatcgtttccaaactgttgtcatcact
tcaggaactctcagcccaatcgatctctaccctcgtcttctaaattttaatcctgttata
agcaggagcttcacaatgtccttaacaagggactgcatatgccccatggtattgacacga
ggaagtgatcagctaccagtgagtacgaagtttgacatgcgcagtgatcctggtgtcgtg
aggaattatggccgcctcttgctggaaatggcttctgctgtcccagatggcatagtctgt
ttctttgtcagttactcctatatggatggcattgtcaacagctggaacgacatgggaatt
ttacaggacattatgcaacacaagttggtgttcattgaaacaccagatgttgttgagaca
acattggcccttgataattacagaaaagcttgcgattgtggaagaggtgcagtcttcttc
tcagttgccaggggcaaagttgctgaaggtattgattttgatcgacactatggcagactt
gtgattatgtttggtgttccgttccagtacacactcagcaagatattgcgtgctaggttg
gagtatctaagagaaacttttcagatacaggagggtgatttcctgacatttgacgcattg
aggcaagctgctcaatgtgttggccgtgtgatccgctcgaaagcagattacggaatgatg
atatttgctgacaaacgatacagtcggcatgacaaacggtctaaactgccggggtggata
ctgtcacacctgcacgatgcgcacctaaatctgagcactgatatggctctgcatactgcc
cgtgagttcctccggaggatggcccagccatacgacaaggcggggagcggcgggcagaag
accctcctgaccgaggaggacttgcaggacatgggtcgggacgccatggagatgtga
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integrated database retrieval system
