Lolium rigidum (rigid ryegrass): 124649469
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Entry
124649469 CDS
T09103
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124649469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124649469
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124649469
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
ATG17_like
Motif
Other DBs
NCBI-GeneID:
124649469
NCBI-ProteinID:
XP_047045052
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Position
4:complement(88884488..88893246)
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AA seq
941 aa
AA seq
DB search
MDGDDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIA
KAYYHTMTALRQLGSSSDGISSVSVSRAMFETIARNLLLERTDHTLELYEGSGSSWRLAK
SGTPGNIGSFEDILFANNDMQDSPVTVALFPVVRESQLYVGLSFVDMTNRKLGLAEFPED
NRFTNVESALVALGCKECLLPADFDKSIDLQPLQDAISNCSVLLTERKKAEFKSRDLVQD
LGRIIRGSVEPVRDLLSQFDFALGALGALVSYAELLADDTNYGNYTIEKYNLDRYMRLDS
AAVRALNIAEGKTDVNKNFSLFGLMNRTCTAGMGKRLLNSWLKQPLLDVNEINNRLDMVQ
AFAEDPELRQGLRQQLKRISDIDRLTHALRRKSANLQPVVKLYQSCRRISYIKNVLQQYN
GQFSTLVNTRFLSSLEEWLAENRYGKFATLVETAIDLEQVDNGEYRISPLYSSDLAVLKN
ELSDVENKISNLHKHTATDLDLSVDKLKIEKGPFGHVFRISKKDEQKVRKKLTSNYIIIE
TRKDGVKFTSTKLKKLGDQYQALFSEYASCQKTIVDDVVQVSCTFSEVFENFSAIISELD
VLQSFADLATSCPVPYVRPDITTSEEGDIILQGSRHPCLEAQDGVNFIPNDCTLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDQASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGASEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTKAPALFATH
FHELTALANRNGDQNQHVPDLGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVAE
FANFPEAVIALAKSKAEELEDFSTAPNLSDERSDEVGSKRKRVFSPDDVTRGAARARLLL
EDFAALPLDEMDGSKAMEMVAKLKSEFEKDAASNPWLQQFL
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgacgacttcctgccggaggggggcaagctcccggagctcaagctagatgcg
aggcaagcgcagggtttcatctccttcttcaagaagttgcccaaggatcctcgggccatc
cgtctcttcgaccgccgggattattacaccgctcatggtgaaaatgctacgtttattgca
aaggcgtactatcacacaatgaccgccttacgccaactaggcagtagctctgatggaatc
tcaagtgtcagtgtgagcagggctatgtttgaaaccattgcacgcaaccttttgctagag
aggacagaccatacactggagctctatgagggaagtgggtcaagttggaggttagcaaaa
tctggaacacctggaaacattggcagttttgaagatattctgtttgcaaacaatgacatg
caagattctccggttactgttgcattgtttcctgtcgtccgtgaaagtcagctgtatgta
gggcttagttttgtggatatgaccaaccggaagcttgggttggctgagttccctgaagat
aatcgattcacaaatgttgaatcagccctggttgcattaggctgcaaggagtgtcttctt
ccagcagattttgacaaatcaattgatttgcagcctcttcaggatgctattagtaactgc
agtgttctactgaccgaaaggaagaaggctgaatttaaatcaagagatcttgtgcaggat
cttggtagaataatcaggggttctgttgagccagttcgtgacctcctatctcagtttgac
tttgctttgggtgcccttggagctttagtatcatatgctgagttgctagcagatgatact
aactatggaaattacacaattgagaaatacaatttggaccgctacatgcgacttgattct
gccgcggtgcgagcattgaatattgctgaagggaaaactgatgtaaacaagaattttagt
ttgtttggtttgatgaacagaacttgcactgctgggatgggaaagcggttacttaacagc
tggctgaaacaacctttgctagatgtaaacgaaattaataacagattagatatggttcag
gcttttgcagaagacccggagcttcgtcagggtcttaggcaacaacttaaaaggatatct
gatattgaccgcctaacacatgctctccggagaaaatcagccaacctgcagcctgttgtt
aagctctaccagtcctgccgtagaatctcatatatcaagaatgttcttcaacaatacaat
ggacaattttctacattggtaaacacaaggttccttagctctttagaagagtggctggca
gagaatcggtatggcaagtttgctactcttgtcgagacagctattgacctcgagcaagtt
gacaatggcgagtacaggatatctcccctatattcttctgatcttgctgtgctgaagaat
gagctttctgatgttgaaaataaaataagcaacttgcacaagcataccgccactgatcta
gatctttccgttgataagttgaagatagagaaagggccatttggacatgtgttcagaatc
tcaaaaaaagatgagcagaaagtcaggaaaaagcttacgagtaactacattatcatagaa
actcgtaaagatggtgtgaagtttacaagcactaagcttaaaaagctaggtgaccaatac
caggcactgttcagtgaatacgccagttgtcagaaaacgattgtcgatgatgtagtgcaa
gtttcatgcaccttctcagaggtatttgagaatttttctgcaataatatccgagttggat
gttttgcaaagttttgctgatttggcaacaagctgcccagttccttatgtaagaccagac
atcacaacatctgaggaaggagatattattctgcaaggtagtcgacatccttgtctggag
gcccaagatggtgttaactttataccaaatgattgcactttggtgagagggaaaagttgg
tttcagatcatcaccggaccaaacatgggcggaaaatcaacctttatacgacaggttggt
gtaaatatcttgatggcacaagttggttcctttgttccttgtgatcaggcaagcatcagt
gtgagagattgtatttttgctcgtgttggtgctggtgattgccaactccgtggtgtttcc
acctttatgcaagaaatgcttgaaacagcgtccatcttgaaaggtgcatctgagaagtcc
cttataattatcgatgagttgggacgtggaacttccacatatgatggatttggtcttgca
tgggctatctgtgagcatcttgtggaagtgacgaaggcacctgcattatttgctacccat
tttcatgaattaactgcattagcaaatagaaatggtgatcagaaccaacatgttccagat
ttgggaattgcaaattatcatgtgggtgcacatatagacccatcaagtcggaagttgact
atgctttataaggttgaacctggtgcctgtgaccaaagttttggtatccatgttgcggaa
tttgctaattttccagaagctgtcattgctcttgcgaaaagcaaagcagaagagttagaa
gacttctctactgcaccaaacttgagcgatgaacgcagtgatgaggttggatcgaagcgc
aaaagggtgtttagcccagatgatgtgaccaggggagctgctcgggctcggcttctgttg
gaggattttgctgcactgcctctagatgagatggatgggagcaaggccatggagatggtc
gccaaattgaaatccgagttcgagaaagatgcagccagtaatccatggcttcaacagttc
ctctga
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