Lolium rigidum (rigid ryegrass): 124649860
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Entry
124649860 CDS
T09103
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03030
DNA replication
lrd03420
Nucleotide excision repair
lrd03430
Mismatch repair
lrd03440
Homologous recombination
lrd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124649860
03420 Nucleotide excision repair
124649860
03430 Mismatch repair
124649860
03440 Homologous recombination
124649860
03460 Fanconi anemia pathway
124649860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124649860
03032 DNA replication proteins [BR:
lrd03032
]
124649860
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124649860
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124649860
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124649860
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124649860
MMR (mismatch excision repair)
124649860
DSBR (double strand breaks repair)
HR (homologous recombination)
124649860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF936
zf-CCHC_5
DUF223
BRCA-2_OB1
Motif
Other DBs
NCBI-GeneID:
124649860
NCBI-ProteinID:
XP_047045380
LinkDB
All DBs
Position
4:59636783..59645773
Genome browser
AA seq
831 aa
AA seq
DB search
MQAPRLTSGAVKEIAELPKGLGTIQPVLQVADVRPITAKSAAGSDRFRMLVSDGVHSLQS
MLATDLNRFVTDGTLRLGSIVHLLEVMCSDIQGRRIIIVCKLDILQSQCDMIGKPKIYET
KSSREGQEPNLRATAIAPRVEQVANNLSYGGSYNGVHGTLDSSIGRTVRSGPNNVFSGSS
HDTMSAQNTMHTNVVQPNPQQPFLNSHQSQRFAVPSTAGGLGPPDNTYVRPAQPSYQQPP
PAYRNSGPVTKNEAGPRVTPISALNPYQGTWKIKARVTAKTHVNHYINAQGPGKLFTFDL
LDAHGGEIRAKCFKDVVDQFYDLIEVGKVYLISGGGPGGLKPAQKQYNPLNNDFEISMDA
RTSVEVCSSDDNSIPSRRFNFRQISEIANMDIGAMLDLLGVVTSVSPSSTVTKKNGVKTS
KRVLQLKDVSGCSVEITFWGNFCDAEGQQLQLLCDSGSSPILALKSGRIGDFNGRSVGTI
SSSCLNINPDFPEAERLRQWYITEGKNAAFTSLSVGWTDVRNTVAQIKEEDMGKSEKPDW
ITVMGTVWNIKTDNFCYPACTAVVNGTRCTKKVTKDVDEIWQCESCEQSSQNCEYRYMLP
CQIQDHTGTTTYATAFQDAGEEIIGLPAQDLFKIKHEDQDDEKFAEIIQRARYQHYLFKL
KVKEETYNDEARVKCNIVKVQKLDDTAKESRFLLGVIDSLLAEDGSGSTPAVNGGVAINA
GFTSNNTYAMNMGFPNQFGQQASLYGGMPSTPSATRYAQTGHVSRDSPVQVNSYSPPAGG
NASSGLCYKCSQPGHFARDCLAQAAAPQRQTYGNGAATSGGYNRQSYAGNF
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgccgcggctgacctcgggcgcggtgaaggagatcgcggagctccccaaaggg
ctgggcaccatccagccggtgctgcaggtggcggacgtgcggcccatcaccgccaagagc
gcggcggggtcagaccggttccggatgctcgtctccgacggcgtccactcgctgcagtcc
atgctcgccaccgacctcaaccgcttcgtcaccgacggcaccctccgcctcggctccatc
gtccacctcctggaagtcatgtgcagcgacatccagggccgcaggatcattattgtttgc
aaacttgatattctgcaaagccagtgtgacatgatcgggaaaccaaagatttacgagact
aaaagttcacgtgaaggccaagagcctaacttacgggccactgccattgccccaagggtg
gaacaggttgctaacaatttgtcatatggtggatcctacaatggtgtccatggcacattg
gactcttcgattggtcggacagtcagatctggacctaacaatgtgttttctggtagttct
catgatacaatgtcagcacaaaacacaatgcataccaatgttgtgcagcccaaccctcag
cagccttttctgaactctcatcaaagccaaaggtttgcagttcctagcacagctgggggc
ctcggccctcctgacaatacttatgttcgtcctgcacagccttcgtatcagcagccacct
ccagcatatagaaatagtggcccagttactaagaatgaagctggccctcgtgttactccg
atttctgcattgaacccataccaaggcacatggaagataaaggctagggtgactgcaaag
actcatgtcaatcactacataaatgcacaaggtccaggaaaactcttcacttttgatctc
cttgatgcacatggcggagagattcgtgcaaaatgttttaaagatgtcgttgatcagttc
tatgacctaattgaggttggtaaggtgtacttgatatctggagggggcccaggggggctg
aaacctgcacagaagcagtataaccctttgaacaatgacttcgaaatcagtatggatgct
agaacatctgtagaagtttgttctagtgatgacaacagcatccccagtcggcgtttcaat
ttccgacaaatcagcgaaatagcgaacatggatataggcgccatgctagatttgcttggt
gttgttacatcagttagcccttcttctacagtaacgaagaagaatggtgtgaaaacctcg
aaaagagtcctccaactgaaggacgtgtctggttgcagcgtggaaataaccttttggggt
aacttctgtgatgctgaaggtcagcagctgcagttgctgtgtgattctggttcgagtcct
atacttgccctgaaaagtggccgcattggtgacttcaacggcagatctgtgggcacaatc
agctcaagctgcttaaacataaatccagactttcctgaagcagaaaggctgaggcaatgg
tacataactgaagggaaaaatgctgctttcacttcgttgtctgtgggctggactgatgtc
cgaaatactgttgcacagatcaaggaagaagacatgggaaaatcagagaagccagactgg
atcactgttatgggtacagtttggaacatcaagaccgacaatttttgttatccagcctgc
accgcagtggttaatggtacccgctgcactaaaaaggtcacaaaagatgttgatgagatc
tggcaatgcgagagctgtgaacagagctctcaaaattgcgagtataggtacatgctccca
tgtcaaatccaggatcacaccgggactactacgtatgcaactgcattccaagatgccggc
gaggagataattggcctcccagcgcaagatcttttcaagataaaacatgaagatcaagat
gatgaaaagtttgcagaaatcatacaacgggcccgttatcagcattacttattcaagctg
aaagttaaggaagaaacgtataacgacgaagcgcgtgtgaaatgcaacattgttaaggtt
caaaaattggatgacacagcaaaggagagtcgctttcttctgggagtaatcgatagcctt
ttggcggaagatggctcaggctcaacccctgcggtgaatggcggtgttgctattaacgct
ggtttcacatccaacaatacctacgccatgaatatgggtttcccaaatcagtttgggcag
caagcgagcttatatggtgggatgccttctacaccatctgcaacacggtatgcacagact
ggtcatgtctctagggactctccagtgcaggtaaactcctacagccctccagctggtggc
aatgcgagctcaggtctatgctacaagtgtagccagcctgggcactttgctagagactgt
ctggcgcaggctgctgctccccagcgtcagacttacggaaacggggccgccacttcagga
ggatacaacaggcagtcctatgctggtaatttctga
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