Lolium rigidum (rigid ryegrass): 124649919
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Entry
124649919 CDS
T09103
Name
(RefSeq) uncharacterized ATP-dependent helicase C29A10.10c-like isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124649919
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124649919
5.6.2.5 RNA 5'-3' helicase
124649919
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124649919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
UvrD_C_2
AAA_16
Temptin_C
Motif
Other DBs
NCBI-GeneID:
124649919
NCBI-ProteinID:
XP_047045443
LinkDB
All DBs
Position
4:complement(98735217..98745570)
Genome browser
AA seq
1356 aa
AA seq
DB search
MGSRGRMLFDLNELPTEAEEEAAVVLSQPQLPVPNIYPSNLFLQQGVPQTQGILNNYAFK
HASSGSGFQPFVRSKVSNNGDTKENLDATAASTSMATVAHHAEPSNQVSQAVEREEGEWS
DADCASDTAGSGVSNKEELAGMANIEVKGESLERESAAVKSAEVIKDDTAADPSDTEMVD
VSKDPLLRAPTGPESTKNSECKGNQSGDDLDQGNKSKDVKGVEASYALKFTNNPAKRPKL
DEHKVAMLGKKRARQTVFINVEDAKQAGTMKTITPRRQSSFPAPIVTRTVKEGSRGVGER
AAEKPNQPVVRDQKQSDIGSERSNSADPSDQNGEPNGDVELGSHGRSKKMNAEEPPSDCY
QQSVPRQASSKQPMDPKQFKSRPVSSQRAVLTGQNTADQKPANKRSLVPKRQASGSNTQY
NDSSVERLIREVTNDKFWHNPEEEELQCVPGSFDSAEEYIKVFEPLLFEECRAQLYSSYE
ESLEAASRDAHVMVRVKSVDRRERGWYDVIVLPTHEYKWTFKEGEVAILSFPRPSSAAQS
SRSNRKTAPSVEDAEAESGRLVGTVRRHMPIDTREPIGAIIHFYVGDSFDSSSEANVLKK
LQPRSTWYLTGLGSLATTQREYVALHAFRRLNVQMQNAILQPSPEHFPKYQEQPPAMPDC
FTPSFSDHINRTFNGPQLSAIHWAAMHTAAGTSNGVVKKQEPWPFTLVQGPPGTGKTHTV
WGMLNVIHLVQYQHYYAALLKKLAPESYKQVSSTTNSTSETFAAGSIDEVLQSMDQNLFR
TLPKLCPKPRMLVCAPSNAATDELLSRVLDRGFIDGEMKVYRPDVARVGVDTQSRAAQAV
SVERRTEQLLMKGRDEVIGWLQQLKGREQQLSQEIGLLQRELNMVAVSGRSQGSVGVDPE
VLAHRDRNRDILLQKLAASVESRDKVLVEMSRLLILESKFRVGGNFNLEDARSSLEASFA
NEAEIVFTTVSSSGRRLFSRLSHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQ
LPATVISKAAGTLLYSRSLFERFQQAGCPTILLSVQYRMHPQIRDFPSRYFYQGRLTDSE
TVVKLPDESYYKDALMSPYIFYDISHGRESHRGGSSSYQNVHEAQFALRLYEHLQKLVKA
NGGKKASVGIITPYKLQLKCLQREFEEVMNTEEGKDIYINTVDAFQGQERDVIIMSCVRA
SNHGVGFVADVRRMNVALTRARRALWVVGNANALVQSEDWAALVADAKARKCFIDLDSIP
KDFLAMKVSSNTPGRNSSNNTRNMRAGGPRPRHLDMLPDSRIGMRSDDDERVNSVSRNAS
NRNLDDLGRPGDRSRENLQFGLPRRPNSSNGSRREV
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgggttctcgaggaaggatgttatttgacctcaatgagctcccaacagaagctgaagaa
gaagctgcggttgttttgtcccaacctcaacttcctgttcccaatatatatccctcaaat
ttgtttctccaacagggagtgccccagacacaagggattttgaacaattatgcctttaag
catgcatcttcaggttcaggttttcaaccttttgtgagaagcaaagtttctaacaatgga
gacacaaaagagaatttggatgctactgccgcttctacatctatggcaacagttgctcat
cacgctgagccctccaatcaggtttcacaagcagttgaaagagaagagggtgagtggtct
gatgcagattgtgcttctgacaccgcaggaagtggtgttagcaacaaagaagagttggct
ggtatggcaaatattgaagtgaaaggagaatccctggagagagaatctgctgctgtaaaa
tctgctgaagtgattaaagatgacactgctgctgatcctagtgacactgaaatggttgac
gtgtctaaggatccattgttacgtgctccaacaggacctgagagcacaaaaaattctgaa
tgtaaaggaaatcaatccggggatgatttagaccagggcaacaaatcaaaggatgtcaaa
ggagtagaagccagttatgcattgaagtttacaaacaaccctgcaaagagacctaagcta
gatgaacacaaagtagcaatgcttggtaaaaagcgggccaggcagaccgtgttcatcaat
gttgaggatgcaaaacaagctggcacaatgaagacaataacaccaaggaggcaatcatct
tttccagcaccaattgttacacgtactgtgaaggaaggttctcgtggtgttggtgaaaga
gctgcagaaaaaccgaaccaaccagttgtccgagaccagaaacagtctgatattggttca
gaaagaagtaattctgcagatccaagtgaccaaaatggcgaacccaatggtgatgttgag
ttgggatctcatggcaggtcaaagaaaatgaatgctgaagaacccccctcagattgctat
caacaatctgtgccacggcaggcttcttcaaagcaacccatggatcccaagcagttcaag
agcagaccagtatcttctcagagagcagttctaacaggacaaaataccgcagaccagaaa
ccagccaacaaaaggtctcttgttcccaaaagacaagcttcaggaagtaacacacagtac
aatgactcatctgtcgaacgactcataagggaagtgacaaatgacaagttctggcataat
ccagaagaggaagaacttcagtgtgttcctggaagctttgattctgctgaggagtacatt
aaagtatttgagcctttgctttttgaggaatgcagagctcagctatatagttcctacgag
gagagtctcgaggctgcatcaagggatgcacatgtaatggtgcgtgtgaaaagtgtggat
aggcgtgaaagaggatggtatgatgtcattgttctaccaacacatgaatataaatggact
ttcaaagaaggtgaagttgcaattttgtcattcccacgacctagttcagcagcccagtct
agtagatctaatcggaagaccgctccttcagttgaagacgctgaagcagaaagtggacgg
cttgtaggtacagtcaggcgccatatgcctattgatacacgcgaacctattggggcgatt
attcatttttatgttggggattcatttgattctagcagcgaggctaatgttctgaagaaa
ctccaacctcggagtacctggtatttaaccggtcttggttctcttgcaacaacacagagg
gaatatgtagcattgcatgctttccgacgccttaatgtgcagatgcaaaacgcaattctt
caaccgagtccagagcacttccccaagtatcaagagcagccacctgctatgcctgactgt
ttcacgccaagtttttctgaccatatcaatcgtactttcaatgggcctcagctatcggcg
attcactgggctgcaatgcacacagctgctggtacaagcaatggagtggttaagaaacaa
gaaccatggcctttcacattagtacaaggtcctcctgggacagggaaaacccacactgtc
tggggaatgttaaatgttattcatcttgttcagtatcaacattattatgctgctctgctg
aagaaacttgctcctgaaagttacaagcaagttagtagtaccactaacagtacttcagag
acttttgctgcggggtctattgacgaagttttacagagcatggatcagaacctctttcgc
actcttcccaagctttgccccaaaccacggatgcttgtctgtgccccatcaaatgctgca
acagatgagttgctttctcgtgtactagaccgaggtttcatagatggtgagatgaaggtc
taccgccctgatgttgctcgtgttggagttgatacacaatctcgtgctgcccaagctgtt
tcagttgagcgacggacggaacaacttttgatgaagggccgtgatgaagtaattggttgg
ttacagcagctaaaaggccgtgagcagcagctatcacaagagatagggcttctacagagg
gaacttaatatggtggcagtgtctggtagatcccagggttcagttggggttgatcctgaa
gtgcttgctcacagagatcgtaaccgtgatattctccttcaaaaacttgctgcctctgta
gaaagcagggataaagtactggtagagatgtcgcggctgctgatattagaaagcaagttc
cgtgttggtggtaacttcaatctggaagacgctaggtctagtctggaagccagttttgcc
aacgaagctgaaattgtttttacaacagtgtcaagcagtggtcgcaggttattttctcgt
cttagtcatggttttgatatggttgttattgatgaggctgctcaggccagtgaagtagga
gtcctccctccacttgcacttggtgctgctagatgtgtcttggttggtgatcctcagcag
ctgcctgccactgttataagcaaagcggctggaactttactctatagcaggagcctgttt
gagaggtttcagcaggctggctgccctaccattttgttgtctgtgcaatatcggatgcat
ccccagatccgtgattttccatcaagatacttctatcaagggcgtcttacagacagtgaa
actgttgtcaaattgcctgatgaatcatattacaaagatgcattaatgtcaccttacatt
ttctatgacatctcgcatggccgtgagtctcatagaggtggctcatcttcataccagaat
gttcatgaagcgcagtttgcattgcgtttgtatgagcatcttcagaagctggtgaaagct
aatggtggcaagaaagcatctgttggtataatcactccttataagttgcagttaaagtgt
ctacaaagggaatttgaagaggttatgaataccgaggaagggaaagatatctacataaac
acagttgatgctttccaaggtcaggagcgtgatgtgattatcatgtcatgtgtccgtgct
tcaaaccatggcgtggggttcgttgcagatgtacggcgtatgaatgttgctcttactcga
gctaggagagctctatgggttgttggtaatgccaatgctcttgtgcagtcagaggactgg
gcagcactggtagcagatgcgaaggccaggaaatgtttcatcgacttggatagcatcccg
aaggacttcctagccatgaaggtttcttccaacactccaggaaggaactcttcaaacaac
acaaggaacatgagggctggtggaccgagaccgaggcatctggatatgcttccagactca
aggattggcatgaggtctgatgatgatgagcgtgtcaactccgtttcaagaaatgctagt
aaccgcaatttggatgatctggggcgccctggtgatagatctagggaaaatttgcagttc
ggattgccaaggagaccgaattcatcgaatggttcgaggagagaagtctga
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integrated database retrieval system
