Lolium rigidum (rigid ryegrass): 124650297
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Entry
124650297 CDS
T09103
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124650297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124650297
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
124650297
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Bep_C_terminal
Motif
Other DBs
NCBI-GeneID:
124650297
NCBI-ProteinID:
XP_047045799
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Position
4:complement(107137312..107145486)
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AA seq
907 aa
AA seq
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MEADEGPPPPPPWKQNKSAAAIDSSSGPLSSAAARLSARSRAIPPARDFHFYNNFPSFKS
PVGAAAARADSSLGILGASSLLPKQQQPAFPREDLDDAYDWLVSRNDDLLEMFGASADEF
KALREKEEAAGRKVAPEEMAGDGFQVVHGKKKKKIDMGAEAVGRGDAFGASGSVRMVTMD
KAATSGTKAKVPFHIPTIPRPQDVYHIVVDNTSNPFQHAFLERSDDGARPLHPLEKLPAV
QLFDRRVLESEPLKPTALDDTPFTYVEDRKTLEVLATKLKNATEFAVDLEHNHYRSFQGL
TCLMQISTRTEDFIVDTLKLRNYLGENLREVFQDPTKKKVMHGADRDIIWLQRDFGIYVC
NLFDTGQASRVLQMERNSLEHLLHHFCAVTANKEYQSADWRLRPLPAEMTKYAREDTHYL
LYIYDLMRLRLLNESSGENDLLLEVCKRSNEICLQLYEKEQLTDSSYLYIHGLKENELSA
RQLAVLSGLYQWRDGIARAEDESTGYILPNKTLLEIAKQMPVTTGRLKRTVRSKNKFLDQ
HLGHVITTIRNAVANSDAFESIAEQLKKGRLEELMVADAKNSSEDTEMISVACANNDESN
IHPSDESAVVPTVITNVGIASSCTGNVTSGASLGNLRLDSTTAETKSFGTLSGTTDLADS
EILSNGRQQQVAKATVQVLKRPTAFGALLGKPSSGRKPNIFAGFSSEQTKSKVDKIKSSV
VLPFHHFSGGAKPLATTLPVAKSVHPEPEIICNDPASQMEEVIQLDTGTDDHNFPENNNA
DGQRQCEPEGTELSSPPSELSSGIEQHFQSLNEGRNLQQNQKAPEEPEFNDQLKAFDYAE
ARKNISFGEVRADRRKDNAVARAINKESGDKRRTSKQPGDEEDEGNFQNPRRRQAFPPSG
NRSSTYH
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggacgagggcccgccgccgccgccgccgtggaagcagaacaagtcggcagca
gccatcgattcctcgtcgggacccctctcctccgccgccgcgcgcctctcagcccgctcc
cgcgctatccctcccgcccgcgacttccatttctacaacaacttcccctctttcaagtcc
cccgttggcgccgccgccgcaagggctgactcctccctcggcatcctcggcgcctcatca
ctcctcccaaagcagcagcagccagctttcccccgggaggacctcgacgacgcctacgac
tggctcgtctcccgcaacgacgacctgctcgagatgtttggcgcctccgccgacgaattc
aaggcactgcgggagaaggaggaggctgcagggcggaaggtcgcgccggaagagatggcg
ggggacggattccaggttgttcacggcaagaagaagaaaaagatcgatatgggagcggaa
gctgttggcagaggtgatgcctttggggcttctggttcggtgaggatggtcaccatggac
aaagcggcaacatcagggacgaaggcaaaggtgcccttccacatccccaccatcccacgg
ccgcaggacgtgtaccacattgtggtggacaacacgagcaatccattccagcatgccttc
cttgagcggagcgatgatggtgcccggcccttacacccactggaaaaacttccggcggtg
caactatttgacaggcgtgttcttgaaagtgagccattgaaaccaactgctttagatgac
accccttttacatatgtcgaagaccggaaaaccttggaagtgctggcaacaaagctgaag
aatgcaaccgagtttgctgtcgatctggagcacaaccactatagatcttttcagggtctc
acctgcctgatgcagatttcaactagaactgaagactttatcgtggacacccttaagctg
cgcaattaccttggtgagaacttaagagaagtttttcaagatccaactaagaagaaggta
atgcatggggcagatcgtgatataatatggcttcaacgagactttggaatatatgtctgc
aacctttttgacacaggccaggcttcgagagtcttacagatggagcgcaacagcctggag
catcttttgcatcatttctgtgcagtgacagcaaacaaagaataccagagtgcagattgg
aggttgaggccacttcctgctgaaatgacaaagtatgctagagaagatacacactatctg
ttgtacatatatgacttaatgcgcttgagactgctgaacgagtcttcaggtgaaaatgat
ctccttttggaggtttgcaaacgtagcaatgaaatctgcttgcaattatatgagaaggag
cagctgactgattcatcatacctttacatacatgggttgaaagaaaatgaactgagtgca
aggcagctggccgttctctctggtctatatcaatggagagatggtatcgctcgtgctgag
gatgagagcactggttatatactacccaataagactctacttgagatagccaagcagatg
cctgtgaccactgggaggttaaagagaacagtgaggtcaaaaaataaatttcttgatcaa
catctcggacatgtcattactaccatcaggaatgctgttgcaaattcagacgcttttgaa
agtatagctgagcaactgaagaagggaaggctggaagagttaatggtggcagatgcaaag
aacagcagtgaagacactgaaatgatttctgttgcttgtgccaataatgatgagagtaat
attcatccgagcgatgaatctgctgtagttcctacagtgattaccaatgtcggtattgct
tcttcctgtactgggaatgttactagtggagcatctttaggtaatttgcggctagatagc
accacggctgaaaccaagagctttgggaccttgtcaggcactactgatctagcagattca
gagatactgagcaatggtcgtcagcagcaggtagcaaaggccacagttcaagtactgaag
agacctacggcttttggggctctgttgggaaaaccgtcttctggaaggaagccaaatatt
ttcgcaggattttcaagtgagcagacgaagagcaaggtggacaagataaagtcttcggtg
gtactgcctttccatcatttctcaggtggcgcaaaacctctggctactacccttccagta
gcaaaatctgtccacccagagccggaaatcatctgcaatgatcctgcttctcagatggaa
gaagtgattcagttggacactggaacagatgaccacaattttccggaaaacaacaatgca
gatggacagagacagtgcgaacctgaaggtactgagttgtctagccccccttctgagctc
tcctctggtatcgagcagcacttccaatccctcaacgagggcagaaaccttcagcagaac
cagaaagcaccggaagaacctgaatttaacgaccagctgaaggcttttgattacgccgaa
gctagaaagaacatttcatttggagaggttagagctgatagaagaaaagacaatgcagtg
gccagggcaatcaataaagaatctggagataaacggagaacttcgaaacaacctggtgat
gaagaagacgaggggaatttccagaatccacgaaggcgacaggctttcccaccttctggc
aataggagttctacctaccattag
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