KEGG   Lolium rigidum (rigid ryegrass): 124650297
Entry
124650297         CDS       T09103                                 
Name
(RefSeq) protein RRP6-like 2
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    124650297
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrd03019]
    124650297
Messenger RNA biogenesis [BR:lrd03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     124650297
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT Bep_C_terminal
Other DBs
NCBI-GeneID: 124650297
NCBI-ProteinID: XP_047045799
LinkDB
Position
4:complement(107137312..107145486)
AA seq 907 aa
MEADEGPPPPPPWKQNKSAAAIDSSSGPLSSAAARLSARSRAIPPARDFHFYNNFPSFKS
PVGAAAARADSSLGILGASSLLPKQQQPAFPREDLDDAYDWLVSRNDDLLEMFGASADEF
KALREKEEAAGRKVAPEEMAGDGFQVVHGKKKKKIDMGAEAVGRGDAFGASGSVRMVTMD
KAATSGTKAKVPFHIPTIPRPQDVYHIVVDNTSNPFQHAFLERSDDGARPLHPLEKLPAV
QLFDRRVLESEPLKPTALDDTPFTYVEDRKTLEVLATKLKNATEFAVDLEHNHYRSFQGL
TCLMQISTRTEDFIVDTLKLRNYLGENLREVFQDPTKKKVMHGADRDIIWLQRDFGIYVC
NLFDTGQASRVLQMERNSLEHLLHHFCAVTANKEYQSADWRLRPLPAEMTKYAREDTHYL
LYIYDLMRLRLLNESSGENDLLLEVCKRSNEICLQLYEKEQLTDSSYLYIHGLKENELSA
RQLAVLSGLYQWRDGIARAEDESTGYILPNKTLLEIAKQMPVTTGRLKRTVRSKNKFLDQ
HLGHVITTIRNAVANSDAFESIAEQLKKGRLEELMVADAKNSSEDTEMISVACANNDESN
IHPSDESAVVPTVITNVGIASSCTGNVTSGASLGNLRLDSTTAETKSFGTLSGTTDLADS
EILSNGRQQQVAKATVQVLKRPTAFGALLGKPSSGRKPNIFAGFSSEQTKSKVDKIKSSV
VLPFHHFSGGAKPLATTLPVAKSVHPEPEIICNDPASQMEEVIQLDTGTDDHNFPENNNA
DGQRQCEPEGTELSSPPSELSSGIEQHFQSLNEGRNLQQNQKAPEEPEFNDQLKAFDYAE
ARKNISFGEVRADRRKDNAVARAINKESGDKRRTSKQPGDEEDEGNFQNPRRRQAFPPSG
NRSSTYH
NT seq 2724 nt   +upstreamnt  +downstreamnt
atggaagcggacgagggcccgccgccgccgccgccgtggaagcagaacaagtcggcagca
gccatcgattcctcgtcgggacccctctcctccgccgccgcgcgcctctcagcccgctcc
cgcgctatccctcccgcccgcgacttccatttctacaacaacttcccctctttcaagtcc
cccgttggcgccgccgccgcaagggctgactcctccctcggcatcctcggcgcctcatca
ctcctcccaaagcagcagcagccagctttcccccgggaggacctcgacgacgcctacgac
tggctcgtctcccgcaacgacgacctgctcgagatgtttggcgcctccgccgacgaattc
aaggcactgcgggagaaggaggaggctgcagggcggaaggtcgcgccggaagagatggcg
ggggacggattccaggttgttcacggcaagaagaagaaaaagatcgatatgggagcggaa
gctgttggcagaggtgatgcctttggggcttctggttcggtgaggatggtcaccatggac
aaagcggcaacatcagggacgaaggcaaaggtgcccttccacatccccaccatcccacgg
ccgcaggacgtgtaccacattgtggtggacaacacgagcaatccattccagcatgccttc
cttgagcggagcgatgatggtgcccggcccttacacccactggaaaaacttccggcggtg
caactatttgacaggcgtgttcttgaaagtgagccattgaaaccaactgctttagatgac
accccttttacatatgtcgaagaccggaaaaccttggaagtgctggcaacaaagctgaag
aatgcaaccgagtttgctgtcgatctggagcacaaccactatagatcttttcagggtctc
acctgcctgatgcagatttcaactagaactgaagactttatcgtggacacccttaagctg
cgcaattaccttggtgagaacttaagagaagtttttcaagatccaactaagaagaaggta
atgcatggggcagatcgtgatataatatggcttcaacgagactttggaatatatgtctgc
aacctttttgacacaggccaggcttcgagagtcttacagatggagcgcaacagcctggag
catcttttgcatcatttctgtgcagtgacagcaaacaaagaataccagagtgcagattgg
aggttgaggccacttcctgctgaaatgacaaagtatgctagagaagatacacactatctg
ttgtacatatatgacttaatgcgcttgagactgctgaacgagtcttcaggtgaaaatgat
ctccttttggaggtttgcaaacgtagcaatgaaatctgcttgcaattatatgagaaggag
cagctgactgattcatcatacctttacatacatgggttgaaagaaaatgaactgagtgca
aggcagctggccgttctctctggtctatatcaatggagagatggtatcgctcgtgctgag
gatgagagcactggttatatactacccaataagactctacttgagatagccaagcagatg
cctgtgaccactgggaggttaaagagaacagtgaggtcaaaaaataaatttcttgatcaa
catctcggacatgtcattactaccatcaggaatgctgttgcaaattcagacgcttttgaa
agtatagctgagcaactgaagaagggaaggctggaagagttaatggtggcagatgcaaag
aacagcagtgaagacactgaaatgatttctgttgcttgtgccaataatgatgagagtaat
attcatccgagcgatgaatctgctgtagttcctacagtgattaccaatgtcggtattgct
tcttcctgtactgggaatgttactagtggagcatctttaggtaatttgcggctagatagc
accacggctgaaaccaagagctttgggaccttgtcaggcactactgatctagcagattca
gagatactgagcaatggtcgtcagcagcaggtagcaaaggccacagttcaagtactgaag
agacctacggcttttggggctctgttgggaaaaccgtcttctggaaggaagccaaatatt
ttcgcaggattttcaagtgagcagacgaagagcaaggtggacaagataaagtcttcggtg
gtactgcctttccatcatttctcaggtggcgcaaaacctctggctactacccttccagta
gcaaaatctgtccacccagagccggaaatcatctgcaatgatcctgcttctcagatggaa
gaagtgattcagttggacactggaacagatgaccacaattttccggaaaacaacaatgca
gatggacagagacagtgcgaacctgaaggtactgagttgtctagccccccttctgagctc
tcctctggtatcgagcagcacttccaatccctcaacgagggcagaaaccttcagcagaac
cagaaagcaccggaagaacctgaatttaacgaccagctgaaggcttttgattacgccgaa
gctagaaagaacatttcatttggagaggttagagctgatagaagaaaagacaatgcagtg
gccagggcaatcaataaagaatctggagataaacggagaacttcgaaacaacctggtgat
gaagaagacgaggggaatttccagaatccacgaaggcgacaggctttcccaccttctggc
aataggagttctacctaccattag

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