Lolium rigidum (rigid ryegrass): 124650414
Help
Entry
124650414 CDS
T09103
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03030
DNA replication
lrd03420
Nucleotide excision repair
lrd03430
Mismatch repair
lrd03440
Homologous recombination
lrd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124650414
03420 Nucleotide excision repair
124650414
03430 Mismatch repair
124650414
03440 Homologous recombination
124650414
03460 Fanconi anemia pathway
124650414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124650414
03032 DNA replication proteins [BR:
lrd03032
]
124650414
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124650414
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124650414
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124650414
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124650414
MMR (mismatch excision repair)
124650414
DSBR (double strand breaks repair)
HR (homologous recombination)
124650414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
zf-CCHC
zf-CCHC_2
zf-CCHC_3
DUF936
zf-CCHC_5
BRCA-2_OB1
DUF223
Motif
Other DBs
NCBI-GeneID:
124650414
NCBI-ProteinID:
XP_047045901
LinkDB
All DBs
Position
4:complement(36852218..36856824)
Genome browser
AA seq
945 aa
AA seq
DB search
MDAPQLTPGAVKEIWDLPDGPGNIKPVLQVADLRPVTTKSAAAAKQSERFRLLLSDGVHS
QQSMLSTDHNHLVRDGTLRVGSIVLLQDITCNTIQKRRIIIVVKLDVLRSECDMIGTPKI
YEKKIPEGQGPNLPANSAQANSGIYSGAPGMLGNAGSERVEQVANNLSYGAPYNGVHGPV
NPSIGQTVEPVPNNVLSDGSYGTLSAQNTMNVNAVQPNAQRPILNSHQNQRFAVPGTGGS
SGPSGNIYGRSAQSSYQQPAPAYRNSGHVARNEAAPRAIPISALNVYQNTWTIKARVTAK
SHVKHFTNAKGPGKLFSFDLLDAHGGEIRAVCFSSIARYDQFYDLIEVDKVYLISRGVLR
PAKKQFNNLNNDYEINLDNTSSIEVCSGDDSSIPRQQFNFREISEIANMDKGSMVDLLGV
VTSVSPSSTFMRKNGVETQKRVLQLKDMSRCSVEITMWGDFCNAEGQQLQSLCDSGLNPV
LALRSGLVGDFNGKSVGTISSTLLKVNPDFSDAERLRQWYITEGENTACTSLSVGGMSSM
GRTDARTTVRQIKDDNLGRSEKPDWITVMGTISNIITDTFCYPACTAEVNGTRCNKKVTN
NGDGMWQGEKCDHSSPNCEYRYMLQCQIQDHTGTTTFATAFQDAGHDIIGLTAQDLFSMQ
HEDGEKFAGIIRQTRFELYIFKLKVKEETFSDEARVKATIVKAQKLDDTAKESRFLVGAI
DNLLADDGSGSVPGVNGAAAINTGFTSNSTYATNMGGPNQFGQQASLSARMASTPSATRF
AQACAVCGSNEHSVQNCPAVAMDMQQPTASGITPNSYGGSSAGNANARSDLCYKCSQPGH
YSRDCPGQQATSYAASAGNAGARSDLCYKCSQPGHYSRDCPGQQAASYGSSAGNANARSD
LCYKCSQPGHFARDCPAQAGAPQRQGYGNGAASGGYSRQSYVGSS
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgccgcagctgaccccgggcgcggtgaaggagatctgggacctcccggacggg
ccggggaacatcaagccggtgctgcaggtggcggacctgcgccccgtcaccaccaagtcc
gccgccgcggcgaagcagtcggagcgcttccgcctgctgctctccgacggcgtccactcg
cagcagtccatgctctccaccgaccacaaccacctcgtccgggacggcaccctccgcgtc
ggctccatcgtcctcctccaggacatcacctgcaacaccatccagaaacgcaggataatt
attgttgtcaaacttgatgttctgcgaagtgagtgtgacatgattgggacacccaagatt
tatgagaaaaaaatacctgaaggacaggggcctaacttaccagccaattctgctcaagca
aatagtggaatctattccggtgctccaggcatgcttggcaatgctggttctgaaagggtg
gagcaggttgctaacaatctgtcatatggtgcaccctacaatggtgttcatggcccagtc
aacccttcgattggtcaaacagtcgaacctgtacctaacaatgtgttgtctgatggatct
tatggtacattgtcagcacagaacacaatgaatgtcaatgcagtgcagccaaacgctcag
cgaccaatactgaactctcatcagaaccaaaggtttgcagttcctggtacaggggggagc
tctggcccttctggcaatatttatgggcgttctgcacagtcttcgtatcagcagccagct
cctgcatatagaaatagtggacatgttgctaggaatgaagctgcccctcgtgctatcccg
atttcagcattgaacgtttaccaaaatacttggacaataaaggctagggtgactgcgaag
agtcatgtcaagcacttcaccaatgcgaaaggtccaggaaaactcttcagctttgatctt
cttgatgcacatggtggagaaattcgtgcagtatgctttagtagtattgcgcggtatgat
cagttctatgacctaattgaggttgataaggtgtacttgatatctagaggggtgctcaga
cccgcaaagaagcagtttaacaatttaaacaatgactatgaaatcaatctggataataca
agttctattgaggtttgttctggtgatgatagcagtatccctaggcagcagttcaatttc
cgagagatcagcgaaatagctaacatggataaaggctccatggttgatttgctaggggtt
gttacatcagttagcccttcttctacatttatgcggaagaatggtgtggaaacccagaaa
agagtccttcaactgaaggacatgtctcgttgcagcgtggaaataaccatgtggggtgac
ttctgtaatgccgaaggtcagcagctgcagtcactgtgtgattctggtttgaatcctgta
cttgctctgagatctggccttgttggtgatttcaatggcaaatctgtgggcacaatcagc
tcaaccttgttaaaagtaaatccagacttctctgatgctgaacggctgaggcagtggtac
ataactgaaggggaaaacactgcttgcacttctttatctgtgggtggtatgtcaagcatg
ggccggactgatgcccgaacaactgttaggcagatcaaggatgacaacttgggaagatca
gagaagcccgactggatcactgttatgggtacaatatcgaacatcatcacagatactttc
tgttatccagcttgcaccgcagaggttaatggtacacgctgcaataaaaaagtcacaaat
aatggtgacgggatgtggcaaggcgagaaatgtgatcacagctctccaaattgtgagtac
aggtacatgctccagtgtcaaatccaggatcacactgggactactacgtttgcaactgca
ttccaggatgctggccatgacataattggcctcacagcgcaggaccttttcagtatgcaa
catgaagatggggaaaaatttgcaggaatcataaggcagacccgttttgagctatacata
tttaagctgaaagtcaaggaagaaacatttagtgatgaagcgcgcgtgaaagccactata
gttaaggctcaaaaactggatgacacggcaaaagagagtcgctttcttgtgggagctatt
gataaccttttggcggatgatggctcaggctcagttcctggggtgaatggtgctgctgct
attaacactggtttcacatctaacagcacgtatgccacgaacatgggtggcccaaatcag
tttgggcagcaagcgagcttgtctgccaggatggctagtacgccatcggcaacacgattt
gcacaggcttgtgctgtttgtgggtccaatgagcacagcgtgcagaattgccctgcagtg
gccatggatatgcagcaaccaacagcaagtggcatcacgcctaattcctacggtgggtcc
tcggctggcaacgcaaacgccagatcagacttgtgctacaaatgcagccagcctgggcac
tactctagagactgcccagggcagcaggccacctcgtacgctgcttcggctggcaacgct
ggtgccagatcagacttgtgctacaaatgcagtcagcctggtcactattctagagactgc
ccagggcagcaggctgcctcctacggctcttcagctggcaacgccaatgcccggtcagac
ctgtgctacaagtgcagtcagcccgggcactttgccagagactgtccggcgcaggctggt
gccccccagcgccagggttacggaaatggcgccgcttcaggaggatacagcaggcagtcc
tatgtcggtagttcctga
DBGET
integrated database retrieval system
