KEGG   Lolium rigidum (rigid ryegrass): 124652099
Entry
124652099         CDS       T09103                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    124652099
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lrd03021]
    124652099
Enzymes [BR:lrd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     124652099
Transcription machinery [BR:lrd03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     124652099
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 DUF4726
Other DBs
NCBI-GeneID: 124652099
NCBI-ProteinID: XP_047047081
LinkDB
Position
5:complement(154832856..154847163)
AA seq 1942 aa
MEEDQSAVLVAEGAIKSIKLSLSTEAEICTYSINDCPVTHPSQLGNPFLGLPLESGKCES
CGASENGKCEGHFGYIELPVPIYHPCHVSELRQLLTLVCLKCRRMKKGKGKQSNGKENVS
VTACHYADCRALPALSVKETKTADGAFRLELKAPPKKHMTERSWNFLDQYGFHYGGASHD
RILLPEEALNILKKIPDETKKKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSY
DISISLLKKILQKIEQIKKSRAGPPNFESHDVESSDLQLSIGQYIQLRGTTKGPQDAKRY
AVSTDSSHLSTKQWLDKMRTLFISKGSGFSSRSVLTGDPYIGVDVVGLPSEVAKRITFEE
QVTDININRLQEVVDKGDCLTYRDGETTYAITVGSKGYTTLKVGQTISRRIVDGDVVFLN
RPPSTHKHSLQAFKVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELF
SVEKQLTNSHNGKINLQLSNDSLLALKHMSSRTMLRKESANQLAMLLSLSLPAPAVVKSK
PYWTISQILQSALPAELTCEGDRFLVKDSTVVKLDLAKESVQASFSDLVSSINCVKGPGD
ALKFLNALQPLLMEFLLLDGFSVSLQDFSVPKILLEEAQESIKKQSAVLEQSRSSKGQFV
EMRVDNNLKDVKQQISDFVVKSSHLGLLIDPKSDPSVSKVVQQLGFVGLQLYREGKFYSS
RLVEDCFSNFVNRHPPVGNEVQHPPEAYGLVQSSYFHGLNPYEELVHAISTRETIVRSSR
GLTEPGTLFKSLMAILRDVVVCYDGTVRNICSNSIMQLKYREDDATDFPSDITPGEPVGV
LAATAISNPAYKAVLDASQSNNTSWELMKEILQTKVNYKNDTKDRKVILFLNDCSCPKKF
CKEKAAIAVQGCLKKVTLEDCATDICIEYQKQTSLDGTSEATPAFVGHIHLQKAHLETTN
ISTEDILHKCQEVSVKHGMKKGHLAHLFKKITFSTCDCSFTQKPIDGKVPCLQFSFSEDI
PMLSESVEKAVNVLADSMCGVLLDTIVKGDPRIQEAKITWVGSDATSWVKHTKKASKGEP
ALEIVVEKGEALQNGDAWRIAMDACIPVMNLIDTRRSIPYGIQQVQKLLGIACSFDQVVQ
RLSTTMKTVAKGILKDHLVLVANSMTCTGNLNGFNNAGYKATFRSLKVQVPFTESTLFTP
MKCFEKAAEKCHSDSLGCVVSSCSWGKHAALGTGSSFEILWNENQLKSNKEYGDGLYDFL
ALVRTDQEKARYTFLDDVDYLVEDNAMDDMCCLSPVLDDMPTFEDCLEEQVTEKGGPWDN
GTTANARDNSWNVPATVENDSADWGGWGTEKVKDKKTVPEEPADTWADQSAKKDTDGGGG
NWGKQPADQGNSSWNVPVTVENESADWGGWGTEKAKDKKTMPEEPAGLDTWPDQSAKKGT
DGGGRNWGKQPADQGNSSWNVPVTAENDSADWGGWGSEKGKDKSVPEEPAEINTWADQSS
KKDTDGGGGNWGKQPNMPASPSVSAWGKKNSDGGDGTWEKQASSCKKDVDQASWGNEPGP
LSRNTWDDKVSKPHTDAQNDSWGSVAAKTRTCTAEDVPWGSTQTSSAEHMDAQNDSWGNV
AAKAASPSDNAWNAAPVSQGNENSEAKEPDAWDGWGSAQANDSSTDDLNKSSASNNSKGW
KSDGWAAKESRRDQRDNLGRPPMRPVERPPRPRFELPADAKTILHEIEPIVLSVRKIFRE
SCDGVNLSLEDEKFIKEKILEHHPEKEKKLSSETDHIMVNKHHTFQESRCFYVVSSDGTQ
TDFSYIKCLDNYVRKSYAEEPAELVSQMYFQRRNRDRAPAEASQATPAENSQATPQEVQL
ETPAPLAETSQATPHEAQLETPAPLAETASQEALASPSATQQETPVATPQETLAATETVN
KWAEKPDSDSAWGAGASDDKWA
NT seq 5829 nt   +upstreamnt  +downstreamnt
atggaggaggaccaatctgcagtactggtcgctgaaggtgccatcaagagtatcaaactt
agcctatccaccgaggctgagatatgtacttactctataaacgactgccctgttactcat
cccagtcaacttgggaatcctttccttggcttaccacttgagtcagggaaatgcgagtca
tgtggtgcctctgaaaatggcaaatgtgaagggcattttgggtacattgagctgcctgta
cctatatatcatccatgtcatgtcagtgaacttaggcaattactgaccttggtatgtttg
aagtgccgtcgtatgaagaaaggaaagggcaaacagagcaatggaaaggaaaatgtgtca
gtaacggcatgtcactacgctgactgtcgggctctcccggcactatctgtgaaggaaacc
aagacagcagatggtgcatttcgtttagagctgaaagcaccccccaagaaacacatgacg
gaacgttcttggaactttcttgaccaatatggatttcactatggtggagcctcccacgat
aggatattgcttccggaagaggctctgaatatactgaagaagattccggatgagacgaaa
aaaaagctagctgcacggggatacatcgctcagtctggttatgtgatgaaatatcttcca
gtaccccctaactgcctctatattccagaattcacagatgggcagagcatcatgtcctat
gacatctctatatctttattgaagaagatacttcaaaagatagagcagattaaaaaatca
agagctggtcccccaaacttcgaatcacatgatgttgaatcaagtgatttacaactttct
attggccaatacatacagctcaggggtactacaaagggacctcaagacgcgaagagatat
gcagttagcactgattcgtcgcatttatcaacaaaacaatggttagacaagatgaggaca
ttgttcatcagcaaagggtcaggattttcatcacgcagtgtacttactggagatccctac
attggagtagatgtagttggcctgccttctgaagtggcaaaaagaataacttttgaagaa
caggttacagacatcaacattaacagattgcaagaggttgttgacaagggagactgtttg
acctatagagatggtgaaacaacatatgcaatcactgtaggatcgaaaggatataccaca
cttaaagtgggtcaaacgatcagtagaagaatcgttgatggtgatgttgtgttcctgaac
aggccacctagtacgcacaagcattccctccaggcatttaaagtatacatccacgatgat
catacagtcaaaatcaatccccttatatgctctcctcttgcagcagattttgacggtgat
tgtgtgcatatttattaccctcagtcacttgctgcaaaagctgaggccttggagcttttc
agtgtggagaagcaactgactaattcacacaacgggaaaataaacctgcagctatctaat
gacagtttgctagctctgaaacacatgtcttcaagaaccatgttaagaaaagaatcagct
aaccagctggccatgcttctgtccctttctcttcctgcccctgctgtggtcaagtcaaag
ccatactggacaatctcacaaatattgcaaagtgcgttgccagcagaattgacttgcgaa
ggggacagattcctagtcaaggacagcactgtcgtaaaactggatcttgccaaagaatcc
gtccaggcttcattctcggatctagtgtcttccattaattgtgtaaagggtccaggagat
gcgctcaaattcttaaacgcgctgcagcccttgttgatggaatttttacttctggatggt
tttagtgtgagtctgcaagattttagtgtgcccaagattctgttggaagaagcacaggaa
agcataaagaaacagtccgctgtactggagcagtcaaggtcctcgaaaggccagtttgtg
gaaatgcgggttgacaacaatctaaaggacgtcaaacaacaaatttcagattttgtcgtg
aagtcctctcatcttggtcttctgattgacccaaagagtgacccatcagtgtcaaaagta
gttcaacagcttggttttgttggtctgcaactctaccgcgaggggaagttctactcgagc
cgtctcgtggaggactgtttctcaaattttgtgaatagacacccacctgttggaaatgaa
gtccagcatcctccagaagcttatggtcttgtgcaaagttcatatttccatggtctcaat
ccttatgaggagctggtgcatgctatatccacaagagaaactatcgtccgctcctcaaga
gggttgacagaaccaggaactctgttcaagagtctaatggccatcctgcgagatgtagtt
gtatgctatgatggaactgtgaggaacatctgcagcaattcaatcatgcaacttaagtac
agagaagatgatgccacagattttcctagtgatataactcctggagaaccggtgggtgtc
ttagctgccactgctatctccaaccctgcttataaggctgtcttggatgcttctcaaagt
aataatacttcatgggagttgatgaaggaaatacttcagaccaaagttaactataaaaac
gatacgaaagatcgaaaagttatcctgtttcttaatgactgctcttgtcccaagaagttc
tgtaaagaaaaggctgctattgcagtacagggctgtctaaagaaagtcactctagaggat
tgtgccactgatatctgcattgagtatcagaaacaaacaagtttagatggaacttcagaa
gctactccagcatttgttggtcatattcaccttcaaaaggcacatttagaaacgacaaac
attagcaccgaggatattcttcataaatgccaagaagtttctgtgaaacatgggatgaag
aaaggacatctcgcacacctgtttaaaaagattactttctctacttgtgattgttccttc
acacaaaagccgattgatgggaaggttccatgtttgcagttttctttttctgaggacatt
cctatgttatctgaatccgttgagaaagctgtgaatgtgctagccgattctatgtgtggt
gtgcttctggatacaattgtaaaaggtgatcctcgaattcaagaggccaaaattacgtgg
gttgggtctgatgcaacgtcttgggtgaaacacacaaagaaggcatcaaagggtgagcca
gcactagaaattgttgttgagaaaggtgaagctttgcaaaatggtgacgcatggagaata
gcgatggatgcatgcatcccagtaatgaacctcatcgacacacgaaggtccataccttat
ggtattcagcaagtgcagaaacttcttggcatagcatgctcctttgatcaagttgtccag
cgcctttcaacaactatgaaaacagttgctaaaggaattcttaaggaccatctggtactt
gtggcaaacagcatgacatgcactggtaacttgaatgggttcaacaatgctggttataag
gcgaccttccgttcattaaaagttcaagtaccttttacagagtccaccttattcacccct
atgaaatgctttgagaaggctgcggagaaatgtcattctgattcattgggttgtgtggtc
tcatcatgttcttggggcaagcatgcagcacttggcactgggtcatcttttgagattctt
tggaacgaaaatcagctaaaaagcaacaaggagtatggtgatggcctgtacgatttcctg
gccttggtgaggactgaccaagaaaaggctagatacacattcttggacgatgtggactac
cttgttgaagacaacgcgatggatgatatgtgctgcttatcaccagtactggatgatatg
cccacttttgaagattgtcttgaagaacaagttaccgagaagggtggcccatgggataat
ggcacaacggcgaatgcaagagacaattcttggaatgtgcctgcgacagtggagaatgat
tccgctgattggggcggctggggcactgaaaaggtaaaggataagaagaccgtgccagaa
gaaccagcggatacttgggctgatcagagtgctaagaaggatactgatggaggtggtggt
aactgggggaagcagccagcagatcaaggaaattcatcttggaatgtgcccgtgacagtg
gagaatgaatctgctgattgggggggctggggcactgaaaaggcgaaggataagaagact
atgccagaagaaccagctggactcgatacttggcctgatcagagtgctaagaagggtacg
gatggaggcggtcgtaactgggggaagcagccagcagatcaaggcaattcatcttggaat
gtgcctgtgacagcggagaatgattctgctgattggggtggctggggcagtgaaaaggga
aaggataagagtgttcctgaagaaccagctgaaatcaacacttgggctgatcagagttct
aaaaaggatacagatggaggtggtggtaactggggtaagcagccgaacatgccagcatca
ccatcagtcagtgcatggggcaaaaagaattcagatggaggtgatggtacctgggaaaag
caagccagctcttgcaagaaagatgttgaccaggcctcttggggaaatgagccagggcca
ctgtcaagaaatacatgggacgacaaggtttctaagccgcatactgatgcacagaatgat
tcctggggaagtgtggcagctaagactcggacttgtactgcagaagatgttccttgggga
agtactcaaacttcttctgcggagcatatggatgcacagaatgattcctggggtaatgtg
gctgcaaaggctgcttcaccgtcagataatgcgtggaatgctgctccagtttcccaggga
aacgagaattcagaagcaaaggagccagatgcttgggatggctggggttctgctcaagcc
aatgactccagtactgatgatttgaacaagagcagtgcttctaacaacagcaaaggctgg
aaatcagatggatgggctgccaaagaaagccggagagaccaaagagacaatctgggtagg
cccccaatgagacctgtggagaggccaccaagaccacggttcgaactaccagctgatgca
aaaacgattttacacgaaattgaacctattgtattatcggtcagaaagatcttccgtgaa
tcatgcgatggtgtaaatctttccctggaggatgagaagttcatcaaggagaagattctg
gagcaccaccctgaaaaggagaagaagctgtcctctgaaactgatcatataatggttaac
aaacaccacacgttccaggagagtcgctgcttttacgtggtgtcatcagatggaacacag
acagacttctcatacatcaagtgcctggacaattacgtgaggaagagctatgcagaagag
cccgccgaactggtctcccagatgtacttccagaggcgcaaccgtgatcgagcaccagcc
gaggcttctcaagcaactccggcagagaactcgcaagccactccacaggaggttcagcta
gagactccagccccgctggcagagacctcgcaagccactccacatgaggctcagctagag
actccagccccgctggcagaaacagcttcacaagaggctctagcttctccatcagcgacc
cagcaagagaccccagtggcgactccacaagagactctggcagcgacagagaccgtcaac
aagtgggctgaaaagccagattctgattcagcatggggtgcaggagcctccgatgataag
tgggcctga

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