Lolium rigidum (rigid ryegrass): 124652779
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Entry
124652779 CDS
T09103
Name
(RefSeq) TATA-box-binding protein 2
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124652779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124652779
03021 Transcription machinery [BR:
lrd03021
]
124652779
Transcription factors [BR:
lrd03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
124652779
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124652779
RNA polymerase III system
TFIIIB
124652779
RNA polymerase I system
SL1/TIF-1B
124652779
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
DUF4295
Motif
Other DBs
NCBI-GeneID:
124652779
NCBI-ProteinID:
XP_047047777
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All DBs
Position
5:complement(46638705..46644354)
Genome browser
AA seq
202 aa
AA seq
DB search
MAAAEAALEGSEPVDLSLHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFA
AVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLSFPAKFKDFKIQNI
VASCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVR
EQTYTAFENIYPVLTEFRKVQQ
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggaggcggcgctggaggggagcgagccggtcgatctctccctgcacccc
tccggcatcgtccccacgctccagaatatagtgtcaacggtcaacttagactgtaaattg
gacctgaaagcaatagctcttcaggcacgcaatgcagaatataaccccaagcgttttgct
gcagttatcatgcggataagagaaccaaaaactactgcactgatattcgcatctggaaaa
atggtctgcactggagcaaagagtgaacagcaatcgaaacttgctgctagaaagtatgct
cgtataatccagaagcttagctttcctgcaaaattcaaggacttcaagatccagaatatt
gttgcatcttgtgatgtcaaattccctataaggcttgagggcctcgcatattctcatggc
gctttctcaagttatgagccagagctatttcctggcctgatttatcggatgaggcagcct
aagattgtcctactaatttttgtttcaggcaagattgttctgactggagcaaaggtgaga
gaacagacgtatacagcctttgagaacatatatcctgtcctcacagagttcagaaaagtt
cagcaatga
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integrated database retrieval system