Lolium rigidum (rigid ryegrass): 124652781
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Entry
124652781 CDS
T09103
Name
(RefSeq) THO complex subunit 3-like isoform X1
KO
K12880
THO complex subunit 3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124652781
09122 Translation
03013 Nucleocytoplasmic transport
124652781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124652781
03041 Spliceosome [BR:
lrd03041
]
124652781
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124652781
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124652781
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124652781
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WD40_Gbeta
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_NOL10_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_WDR75_1st
DSE1_N
Beta-prop_EIPR1
Beta-prop_EML
eIF2A
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_Vps41
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
Tricorn_2nd
Beta-prop_IFT122_2nd
CFAP251_N
Connectase_N
WD_LRWD1
EAD10
Motif
Other DBs
NCBI-GeneID:
124652781
NCBI-ProteinID:
XP_047047779
LinkDB
All DBs
Position
5:66725156..66731772
Genome browser
AA seq
335 aa
AA seq
DB search
MEGREDDKKGGAAAGSSAPGSRFKNLVSREYYSHKKKVHSVAWNCIGTKLASGSIDHTAR
VWSIDPHGHSKVKDIELKGHTDSVDQLCWDPKHPETVATAAADKTIRLWDARSGKCQVVE
LSGENINITYKHDGTHIAVGNKVYNNRIWEDELTIVDVRKLKPIHRQKFPYEINEISWNK
TGDMFFITTGLGFVEVVNYPSLDVVCKLNAHTAGCYCIAMDPLDRYFAVGSADSLVSLWD
VKELLCIKTFTKLEWPVRTVSFSHSGEFLAYASEDPFIDIANIQTGRSIHQIPSKAAMNS
VEWNPKYNLLAYAGDDKNKYQADDGVFRIFGFEST
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggaggggagagaagacgacaagaagggcggcgccgccgccggcagctcagcgccgggg
tcaagattcaagaacctggtgtccagggagtactacagccacaagaagaaggtgcactcc
gtagcgtggaactgcataggcacaaagcttgcctcaggctctattgatcatactgcacgt
gtctggagtattgatccccatggccattccaaggttaaagacattgagctgaaaggccac
acagatagtgtagatcaattatgctgggatccaaagcatcctgaaacagttgctactgca
gctgctgacaagacaattcgtctttgggatgcgcggagtggaaaatgccaagttgttgaa
cttagtggagagaacatcaacatcacatacaaacatgatggcactcacatagctgttgga
aataaggtttacaataacagaatatgggaggatgagctgaccatagtggatgtccggaag
ctaaaacccattcacagacagaagttcccttacgagattaatgagatttcgtggaataaa
actggagatatgttcttcatcactactggacttggatttgttgaggtggttaattatcct
tcccttgatgttgtctgcaaactaaatgctcacaccgcaggatgctattgcatagcaatg
gatccccttgataggtattttgctgtcggaagtgcagattcacttgtcagtctttgggat
gtcaaagagttgctatgcattaaaaccttcacaaaactggagtggcctgtaagaacagtt
agcttcagtcacagcggagaatttcttgcatatgccagtgaagatcctttcattgacatt
gccaacattcagactggacgatcaattcatcagattccatctaaggcagctatgaacagc
gttgaatggaaccctaaatacaacctcctggcttatgcaggagacgacaagaataagtac
caggctgatgatggtgttttccgaatatttggtttcgaaagcacataa
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integrated database retrieval system
