Lolium rigidum (rigid ryegrass): 124652965
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Entry
124652965 CDS
T09103
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124652965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124652965
03036 Chromosome and associated proteins [BR:
lrd03036
]
124652965
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124652965
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124652965
PBAF complex
124652965
GBAF(ncBAF) complex
124652965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
124652965
NCBI-ProteinID:
XP_047047973
LinkDB
All DBs
Position
5:complement(102212134..102220243)
Genome browser
AA seq
759 aa
AA seq
DB search
MPRKASSSSDAKLKWRKRKRSQDPSPSKPDHSDDSDSAPEDDAPHASANGAETLDDDDLR
DAEVLSAAEPISSFPVAARRTITRVHPSVLAAVAADRAVSAGDTTAPAAPALENISHGQL
QVLAAMLPDHPSLSNDPDRPSSYVCTVPPLMEGQGVPKQFYGKLLLVPRHADWFSPATVH
RLERQVVPHFFSGKSPGNTPEKYIMLRNKVIVKYLERPARRLAFAECQGLVTNTTELYDL
SRIVRFLDTWGIINYLAAGSVHRGLRLATSLVREEQTGELQLQSAPLKSIDGLVLFDRPK
CSVRAEDIASVASTSSALEVPNGDTGLADLDEKIWERLSESFCSYCLQPLPSLHYESQKE
ADIALCSDCFHDARFVPGHSSLDFQRVDGTKDGLDNDGDSWTDDETLLLLEGVEKYNDNW
NGIADHVGTKSKAQCIHHFIRLPVEDGLLESMEVPEASVSSRVQSNGFSHSNSNGSISGS
FPQSSQPGQQLPFVNSANPVMSLVAFLASAVGPRIAASCANAALSVLTRDDSRMCPEGND
AMGQAARPNYDASSVSPENVKYAAMCGLSAAATKCKLFADQEEREIQRLAATIINHQLKR
LELKLKQFAEVETLLLKESEQVERGRQNLNAQRTRVMSARFGSSGGPMPGGSSTMASNPM
NQANPRPPAMQGAMPPANMQAYYANNMQGHPAQLAFLQQQQQPAQHMLSFGPRLPLSAIH
PGSTSAPSVMFNPGTPNSATQSHHHPMLRPPTGNNSSFG
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaggcctcctcctcctcagatgcgaagctcaagtggcgcaagcggaagcgc
tcccaggacccctccccgtccaagcccgaccactccgacgactccgactccgcgccggaa
gacgacgcgccccacgcctccgccaacggggccgaaaccctagatgacgacgacctccgc
gacgcggaggtgctctccgcggccgagcccatttccagcttccccgtggccgcccgccgc
accatcacccgggtccacccgtccgtgctcgcagccgtggccgccgaccgtgccgtgtct
gctggcgacaccaccgccccggctgcccccgcgctcgagaacatctcgcacggccagctg
caggtgctcgcggccatgctcccggaccacccgtccctctccaacgaccccgacaggccg
tcctcctacgtctgcaccgtgcctccgctcatggaaggccagggcgtgcccaagcagttc
tacggcaagctgctcctcgtgccccgacacgcagattggttctcgccggcaacggtgcac
aggctggagaggcaggtggtgccgcacttcttctcggggaagtccccggggaacacgccg
gagaagtacatcatgctgaggaacaaggtgattgtcaagtacctggagcggcccgccagg
aggctcgcgtttgccgagtgccaggggctcgtcaccaacacgactgaactgtacgacctg
agtaggatcgtcaggttcctggacacgtgggggatcattaactacctcgccgctgggtct
gtgcaccggggcttgagattggcaacgtcgttagtcagggaggagcagacaggggagctg
cagctgcaatccgcgccgttgaaatcgattgatggcttggttttgtttgatcgcccaaag
tgcagtgtccgggcggaggatatcgcgtcggtggcctcgacttcctctgctctggaggtg
ccaaatggtgatactggtcttgcagacttggatgaaaagatttgggagcgcctgtccgag
agtttttgtagttattgcttacaacctttgcccagcttacactatgagtcacaaaaggag
gcagacattgcgctttgctcggattgtttccacgatgcaagatttgttcctggccactca
agcttagattttcagagagtggatggaacgaaagatggattagacaatgacggggacagc
tggactgatgatgaaactctactgttgctagagggcgtagagaagtacaatgataactgg
aatggtattgctgaccatgtcggaacaaagtcaaaggcgcaatgtattcaccattttatt
cgtcttccagtggaagatggcttgttagagagcatggaagtgccagaagcatctgtttca
tctagagtacaaagcaatggattttcgcattcaaattccaacggcagcatttcaggaagc
tttccccaaagtagccaacctggacagcagcttccattcgttaattccgctaatccagta
atgtctctggttgcattcttggcctctgcagtaggaccaagaatagcagcatcctgtgca
aatgctgctttatctgttttgacgagagatgattccaggatgtgtccagaaggcaatgat
gctatgggtcaagctgctcgtccaaactatgatgcctcatctgtctctcctgaaaacgtc
aaatatgctgcaatgtgtggcttgtcagcagcggcaacaaagtgcaaactttttgcagat
caggaggagcgtgaaattcagagactggcggccaccatcataaaccaccagttgaagaga
ttggagttgaagttgaagcaatttgcagaggtcgagaccctgcttttgaaggaaagtgag
caggttgagaggggaaggcagaatcttaatgctcagcgtacccgggtgatgtcagctcgg
tttggttccagtggaggcccaatgcccggaggcagcagcaccatggcctcaaatccaatg
aatcaagccaaccctcgaccaccagcaatgcaaggagcaatgcctccggccaacatgcaa
gcgtattacgccaataacatgcagggacatccagcccagcttgctttcttgcagcagcag
cagcagccagcacagcatatgctctcatttgggcctcgcctgccactctcggctatccac
ccaggctcaacgtcagcaccaagcgtcatgttcaatcctggcacgcccaattcggccacc
caaagccatcatcatccaatgctgagaccgcccactgggaataattctagttttggttaa
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