Lolium rigidum (rigid ryegrass): 124653005
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Entry
124653005 CDS
T09103
Name
(RefSeq) cleavage stimulation factor subunit 77-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124653005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124653005
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124653005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_16
TPR_2
Motif
Other DBs
NCBI-GeneID:
124653005
NCBI-ProteinID:
XP_047048012
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Position
5:56239671..56250151
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AA seq
732 aa
AA seq
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MDIYNVEAAEILANEALQLPIAEAAPIYEKLLATFPTAVKYWKQYVEAYIAANDEETAKQ
IFSRCLLTCPHINLWRCYINFIKRVNSKRGSEGLEETKKAFDFMLNYVGNDVASGPVWME
YIAFLKSMPVVTPQDESRRMTTIRKVYQKAILVPTSHVEQLWKDYDNFENSVSRTLAKGL
LSEYQPKFNSARAVYRERKKYIDDIDWSMLAIPSTGSYKEEQQCMAWKRLLTFEKGNPQR
IDAAAANRRITFTYEQCLMYLYHHPDVWYDYATWHAKNGSTDSAIKIFQRAVKALPGSEV
LKYAFAELEESIGAIQPAKTIYESLVAENASMTSLAHIQFIRFLRRTEGIEAARKYFLEA
RKLPSCTYHVYVAYATMSFCLDKDAKVAQNVFEAGLKKFMQEPGYVLEYADFLCRLNDDR
NVRALFERALSLLPPEESVEVWKRFAQFEQTYGDLSSMLKVEQRRKEALSKTSEDALSSL
ENTLYDIVSRYNYMDLWPCSSKELDYLSRQEWLAKNMSKKSDKSVMLTSVVGPTLDKGNV
GVGANAKLLPLSARVVRPETSRMIIYDPRQIKGPVITATSSGYTKEVDDIFKMLSPPIMS
FITNLPAIEGPSPDIDIVLGVLLQSTLPAGLDVGKPSGPVPGATTTDLSGPRNQNGSVHR
PPRDGQPTKRKAIERQEEEDAAAAAQNRAMPRDIFRLRQIQRSRGVAPAQSGSAAMSSGS
MFSGEQSANSSS
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggacatctacaacgtagaggccgcggagatcctcgccaacgaggcacttcagctcccc
atcgccgaggccgcccccatctacgagaagctgctcgccaccttccccaccgcggtgaag
tactggaagcagtacgttgaagcatacattgccgcgaacgacgaggaaaccgccaagcag
atattcagcagatgcttgctcacctgccctcacattaatctctggcgttgttacatcaac
tttattaaaagagtaaacagtaaaaggggctccgagggtctggaggagacaaaaaaggct
tttgacttcatgctgaactatgttggcaatgatgttgcatctggccctgtttggatggag
tacattgcattcttgaaatcaatgccggttgtgacgccccaggatgagtcacgccgcatg
actactataaggaaagtataccagaaggcaattttggtcccaactagtcatgtcgagcag
ctgtggaaggattatgacaactttgaaaattccgttagtcgcaccttggcaaaaggcttg
ctatctgaatatcaaccaaagtttaacagtgctagggcggtatatagagaacggaagaag
tacattgacgatatcgattggagcatgctggccatcccctctacaggctcctacaaggaa
gagcaacagtgtatggcatggaaaagacttctgacatttgagaaggggaaccctcaaaga
atcgatgctgcagctgctaataggcgtattacatttacttatgagcaatgcctaatgtat
ctttaccatcatcccgatgtatggtatgattatgctacgtggcatgcaaagaacggttct
acggattctgcaatcaaaatatttcagcgcgctgtaaaagcactccctggttctgaagta
ctaaaatatgcctttgctgaactggaagagtctattggggcaattcagcctgctaagacg
atatatgagtctcttgtagctgaaaatgcaagcatgacatcacttgcacatattcagttt
attcggtttctaaggagaactgaaggcattgaagcggctcgcaagtactttttggaagct
cggaagttgccaagctgcacctatcatgtgtatgttgcttatgctacaatgtcattttgc
ctcgacaaagatgcgaaggtggctcaaaatgtttttgaagctggtttaaagaaatttatg
caagagccaggatacgtccttgaatatgccgacttcctgtgtcgcttaaacgatgataga
aatgtacgtgctttgtttgagcgagctctgagcttacttcctcctgaggaatccgtagag
gtatggaaacggttcgctcaatttgagcagacttacggggatttgtcaagcatgttaaag
gtggaacaaagaaggaaggaggctttatctaagacatcagaagatgccttatcgtcgtta
gagaacacactatatgacattgtttctcgatataattatatggatctttggccatgctca
tcaaaagaattggattatctgtcaagacaggagtggcttgcaaagaacatgtctaagaag
agtgacaagtcagttatgctaactagtgttgttggccctaccttagataaaggcaatgtt
ggggttggtgcgaatgcaaagttattacccttgtctgcaagagttgttcgtcccgagact
tctcgaatgattatttatgatcctagacagataaaaggtccagtgattacagccacatcc
agtgggtacacaaaggaggttgacgatatattcaaaatgctttctccaccaataatgtcc
ttcatcacgaatttgcctgctattgaaggtccatcaccagatatagacattgtgcttggc
gtcctactgcaaagcacattgccagcaggacttgatgttggcaaaccttctggtccggtt
cctggcgctaccactactgacctctcgggtcctcggaaccagaatggatcagttcataga
cctccaagagatgggcagccaacgaaaaggaaggccattgaaaggcaagaggaagaagat
gcagcagcagcggcgcagaaccgagcgatgccccgagacatattcaggctcagacagatc
cagaggagccggggtgtggctcctgctcagtcgggatccgcggcgatgtccagtggaagc
atgttttctggggagcaatcagccaacagctcaagctag
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