Lolium rigidum (rigid ryegrass): 124653241
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Entry
124653241 CDS
T09103
Name
(RefSeq) zinc finger CCCH domain-containing protein 27-like
KO
K13192
RNA-binding protein 26
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lrd01009
]
124653241
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124653241
03041 Spliceosome [BR:
lrd03041
]
124653241
Protein phosphatases and associated proteins [BR:
lrd01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124653241
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
124653241
Spliceosome [BR:
lrd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
124653241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
CCDC28
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
124653241
NCBI-ProteinID:
XP_047048263
LinkDB
All DBs
Position
5:complement(35585497..35598794)
Genome browser
AA seq
922 aa
AA seq
DB search
MQSCFSADFIILKMHKESTAPGLDADKIEVPSPKEESNSTNSEAATDTENFEISDDDDDD
RNHKHRRKEAMPQSFGESTEEQAAGRPLKRRPMISGNGQPFGGADSRGEAQKDFIPKFKR
RLGPGAHSRGGRMNQSFHSASAATRPPMTRGRGRNGAPWTQHDPRFNTLDMMDFASHMAS
QGPPPHPSLFMGAPMPSSGSAQNGSWGPHGFMPGMPNGMLDPFHPHGMQGPIQPAMSPLV
DLGMPRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDMQSLSQFNLPVSAPNAPGLGIQS
EAVTAHVNLTNLGGSKAVTAKDIKSGVADDALKLNGSTGSAVVNTDVYDPDQPLWNNEKP
EASCAGFAHTNDGVWNAETSSYEAGWEHANQGFAADGSQNSKSSVWGRIASKKKSGPSKT
ANTTSTSATGNKRSDYYDDMAPSTIQLKPASTKDTNGQSNSRMLGDVGRQSNRAPHKASR
TLYVNGIPQESNRWEALLSHFQKFGQVIDIYVPANSEKAFVQFSKREEAEAALKAPDAVM
GNRFIKLWWANRDRITEEGEGRVSTKPVLTNSALAQPSSSNRGNDLQSTTPRASSGSSAS
GPGVGPKTLPANSITSVPPAPKRQESMELLEELRKKQDMLAQKRAELRQQLEAYAKQKNS
GNPVKQTETSGKEVGPNAAGKVVDIRSMNTGTEGLQEVASTLEKKISGDLALSSPKYAPT
STQKPAVAVKQTSPLVAPPQNRFKLDNRTTSFRILPLLPPEIANESVLKDHFAAFGELSS
VVLEYTEAHNHDTTLPSLSCSACVTYTTRQSAEKAFITGKSCKGHMLRFMWLTASPGSNN
QSRFQKTSSLVGAAESPSPAAKISRIVTSGTSVIPHSESIPTAESSERFPVEISKVSSSS
VECPPENDSTRNPLLTDPYVPQ
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagttgcttttctgcggattttataatcttgaagatgcacaaagagtctacagct
ccaggactggatgctgacaaaatagaagttccttcaccaaaggaagaaagtaattccaca
aattctgaagctgctacagataccgaaaactttgaaattagcgacgacgacgacgatgat
cgtaatcacaagcaccgaagaaaagaggctatgcctcaatcttttggtgagagtactgag
gagcaagctgcagggaggcctttgaaaagaaggcccatgatttctggtaatggacagcca
tttggtggagctgattcacgtggggaagcacagaaggacttcataccaaaattcaagagg
cgtcttggaccaggagctcacagtcggggaggtagaatgaaccaatctttccattcagct
tcggctgccactcgccctcctatgacacggggaagaggacggaatggtgcaccctggact
cagcatgacccaagatttaacacacttgacatgatggattttgcatcacacatggcgtca
caaggaccgcctccacatcctagcttatttatgggtgctccaatgccgagtagtggtagt
gctcaaaatggttcatggggtccacatgggtttatgcctggaatgcctaatggaatgctg
gatccatttcacccacatggaatgcagggccctattcagcctgcaatgtcacctttagtt
gatcttggcatgcctcgtcaacgttgtagagacttcgaggagcgtggattttgcttgaga
ggggatatgtgccccatggagcatggagtaaatagaattgttgttgaagatatgcagagt
ctatcacagttcaatcttccagtctcagctccaaatgctccgggactaggaatccaaagt
gaggcagtaactgctcatgttaacttaacaaacctaggaggcagtaaagctgttaccgcg
aaagatatcaaatctggtgtggcagatgatgcattaaagctaaatggaagcactggttca
gctgttgttaacactgatgtatatgatcctgatcagcctctgtggaacaatgaaaagcct
gaagcatcctgtgctggttttgcacatactaatgatggggtatggaatgctgagacctca
agctatgaagcagggtgggagcatgcaaaccagggttttgcagctgatggttcacagaat
tcaaagtcttctgtttgggggagaatagcatcaaagaaaaaatcaggacctagtaaaaca
gctaatactacttcgacaagtgccactggaaacaaaagaagtgactactatgatgatatg
gctcctagcaccatccaattaaagccggcttctactaaggatactaatggtcaatctaat
tcaagaatgcttggagatgtgggccggcaaagtaatagagctcctcacaaagcatctcgc
acactttatgtgaatggcattccgcaggaaagcaatagatgggaggcccttctttcgcac
ttccaaaaatttggtcaagtaatagatatctatgttccagctaacagtgagaaagctttt
gtccagttctctaaaagggaagaagcagaagctgccctaaaagctccagatgctgtgatg
ggaaaccgttttataaagctatggtgggctaacagggacaggattaccgaggagggagag
ggtagagtctctacaaaacctgtgctgacaaattcggctctagctcaaccatcttcatcc
aacagaggaaacgatcttcaatctacaactccaagggccagttctggatcttctgcatca
ggtcctggtgtaggtcctaaaacgttgcctgcaaacagtataacatcagtacctcctgct
cccaaaaggcaagaaagtatggaactcctggaagaactccgtaaaaaacaggatatgtta
gctcagaagcgggctgagttacgccagcagttagaggcatatgcgaaacaaaaaaattca
ggaaatccagtaaaacagacagagactagtggaaaagaagttgggccaaatgctgctggg
aaagtggtagatataaggtccatgaacactgggacagaagggctgcaagaggttgctagt
acactggaaaagaaaatttctggggatttggctttatcttccccaaaatatgctccaaca
tccacacagaaaccagctgtagctgttaagcagacatctcctctggtagcaccacctcag
aataggtttaagctcgacaaccgcaccacgtcgtttaggatccttcctcttttgccacct
gaaattgcaaatgaatctgtcttgaaagatcattttgcagcattcggggagctctcatct
gttgttctagaatacactgaagcccacaaccatgatacaaccttgccttctctgagttgc
tcagcttgtgtgacctacacaacgcgacaatctgctgagaaagcatttattactggcaaa
tcttgtaaagggcatatgctacgatttatgtggttgacggcttctcctggctcaaataac
caatcaagatttcagaaaacatcaagtcttgttggggcagccgagtccccaagccctgct
gcgaaaatctcacgcattgtcacatctggtacatcagtcattcctcatagtgaatccatt
ccaactgcagaaagttcagagagatttcctgttgagatttccaaggtatcatcttctagt
gttgagtgcccacctgaaaatgattccacaaggaatcctctccttacagacccttacgtt
ccacaatga
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