Lolium rigidum (rigid ryegrass): 124653247
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Entry
124653247 CDS
T09103
Name
(RefSeq) THO complex subunit 4B-like
KO
K12881
THO complex subunit 4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124653247
09122 Translation
03013 Nucleocytoplasmic transport
124653247
03015 mRNA surveillance pathway
124653247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124653247
03041 Spliceosome [BR:
lrd03041
]
124653247
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124653247
TREX complex
124653247
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124653247
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124653247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
124653247
NCBI-ProteinID:
XP_047048274
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All DBs
Position
5:complement(142726891..142729824)
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AA seq
277 aa
AA seq
DB search
MADALDMSLDDLITKNKSSSQSQSRRGRRNPASAPASASGGPAPAGRRFQARAATRAAAA
PYHQANFRHQAPPAYAYAAQAQQMPVVAAPAVAESGKLYISNLDYNVSNEDIKELFSEVG
DVERYSINYDKSGRSKGTAEVVFARRSDALAALKRYNNVQLDGKPMKIEFIGTNIAAQAP
AIFTLNTPALGNFNFPPRSAPGGDVGGRGWPRGRGGFVGGGRGRGWPRGGGGFGERGRGR
AAVVRGRGRGGRGSQPVSVNDLDADLDKYHSQAMQTS
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccctggacatgtccctcgacgacctcatcaccaagaacaagtcctcgtcc
cagtcccagagccgccgcggccgccgcaacccggcatccgccccggcctccgcctccgga
gggcccgcgcccgcgggccgccgcttccaggcgcgcgccgccacccgcgctgccgccgcg
ccctaccaccaagccaacttccggcaccaggcgccgccggcttatgcgtatgctgcccag
gcccagcagatgcccgtggtggcggcgccggccgtggccgagtcgggcaagctctacatc
tccaacctcgactacaacgtctccaacgaggatatcaaggaactcttttctgaggtgggc
gacgtcgagcgttactccatcaactatgacaagagtggcagatcaaagggaactgcagag
gttgtattcgcaagaagatcggatgctctagctgctcttaagagatacaacaatgtgcag
cttgatggcaaaccaatgaaaattgagttcatcggaacaaatattgcagcacaagcacct
gctatctttactttgaataccccagcattgggaaacttcaattttccgcccagaagcgca
cctgggggagatgttggtggtcgaggatggcctcgtggcagaggtggatttgtcgggggt
ggtcgtggtcgaggatggcctcggggcggaggtggatttggcgagcgtgggcgagggcgc
gctgctgttgtgcgtgggaggggtaggggagggcgtggcagtcagccagtttccgtcaat
gatctagacgctgatctggacaagtaccactcgcaagcgatgcagaccagctaa
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