KEGG   Lolium rigidum (rigid ryegrass): 124653247
Entry
124653247         CDS       T09103                                 
Name
(RefSeq) THO complex subunit 4B-like
  KO
K12881  THO complex subunit 4
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03013  Nucleocytoplasmic transport
lrd03015  mRNA surveillance pathway
lrd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124653247
  09122 Translation
   03013 Nucleocytoplasmic transport
    124653247
   03015 mRNA surveillance pathway
    124653247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrd03019]
    124653247
   03041 Spliceosome [BR:lrd03041]
    124653247
Messenger RNA biogenesis [BR:lrd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     124653247
    TREX complex
     124653247
Spliceosome [BR:lrd03041]
 Complex C
  Other components
   EJC/TREX
    124653247
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    124653247
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 124653247
NCBI-ProteinID: XP_047048274
LinkDB
Position
5:complement(142726891..142729824)
AA seq 277 aa
MADALDMSLDDLITKNKSSSQSQSRRGRRNPASAPASASGGPAPAGRRFQARAATRAAAA
PYHQANFRHQAPPAYAYAAQAQQMPVVAAPAVAESGKLYISNLDYNVSNEDIKELFSEVG
DVERYSINYDKSGRSKGTAEVVFARRSDALAALKRYNNVQLDGKPMKIEFIGTNIAAQAP
AIFTLNTPALGNFNFPPRSAPGGDVGGRGWPRGRGGFVGGGRGRGWPRGGGGFGERGRGR
AAVVRGRGRGGRGSQPVSVNDLDADLDKYHSQAMQTS
NT seq 834 nt   +upstreamnt  +downstreamnt
atggcggacgccctggacatgtccctcgacgacctcatcaccaagaacaagtcctcgtcc
cagtcccagagccgccgcggccgccgcaacccggcatccgccccggcctccgcctccgga
gggcccgcgcccgcgggccgccgcttccaggcgcgcgccgccacccgcgctgccgccgcg
ccctaccaccaagccaacttccggcaccaggcgccgccggcttatgcgtatgctgcccag
gcccagcagatgcccgtggtggcggcgccggccgtggccgagtcgggcaagctctacatc
tccaacctcgactacaacgtctccaacgaggatatcaaggaactcttttctgaggtgggc
gacgtcgagcgttactccatcaactatgacaagagtggcagatcaaagggaactgcagag
gttgtattcgcaagaagatcggatgctctagctgctcttaagagatacaacaatgtgcag
cttgatggcaaaccaatgaaaattgagttcatcggaacaaatattgcagcacaagcacct
gctatctttactttgaataccccagcattgggaaacttcaattttccgcccagaagcgca
cctgggggagatgttggtggtcgaggatggcctcgtggcagaggtggatttgtcgggggt
ggtcgtggtcgaggatggcctcggggcggaggtggatttggcgagcgtgggcgagggcgc
gctgctgttgtgcgtgggaggggtaggggagggcgtggcagtcagccagtttccgtcaat
gatctagacgctgatctggacaagtaccactcgcaagcgatgcagaccagctaa

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