Lolium rigidum (rigid ryegrass): 124653429
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Entry
124653429 CDS
T09103
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03440
Homologous recombination
lrd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124653429
03460 Fanconi anemia pathway
124653429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124653429
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124653429
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
124653429
FA (Fanconi anemia) pathway
Downstream FA components
124653429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DUF4074
HBB
Motif
Other DBs
NCBI-GeneID:
124653429
NCBI-ProteinID:
XP_047048451
LinkDB
All DBs
Position
5:261700950..261709819
Genome browser
AA seq
1187 aa
AA seq
DB search
MSDQIDENCKKLLDDKVQGCPEFKNAQKLSRHPSLQTGGSYEVHDIEDLLRVGKQVKGCP
YFAAQTLAEAAQLVFCPYNYLISPIVRRAMDIDIRGSVVILDEAHNIEDISREAGSVDVD
AESLDSLDGELARLATNQAVAMIYQPLHDVIEGLRNWITDQEVNVRDNEFEHPASFWTGE
NALKELQRAGITPVYFPLLQDCATKAVKAASDTESDEDRLAGHHAMTLETLFSSLSYFFA
GNGRHMYDYQLAFQRFVQREGISATEPRCVMSLWCLNPAVVFQDIANLTQSVILTSGTLS
PMGSFASELGVQFDACMEAAHVIDADSQVFASVLSSGPTTHRLNASYKTADAYSFQDELG
ASIEEICRIVPGGALVFFPSYKLLDKLKVRWTQTEPRGSTEELEPVLNGYYNAILGKVPL
KKGRGGAKQIVKNRVRKNTQQEPGKGGAAFLAVCRGKVSEGIDFSDDNARVVVIVGIPFP
NINDVQVKLKKRYNDSYKSSKNLLSGSEWYCHQAFRALNQAAGRCIRHKFDYGGIILIDE
RYQEERNLVHISKWLKNSIKLYSSFQETMVELNKFFQKAEEHIKIKRQDMFTKVKLDADI
LAANGDKRKLPWPESNFLKQSVLQTNQKVKKEDTGVKVSNIDADMLTVHSDKRKLPSAES
NFSNQSGLQTNQKVKKEHGSVKVSVPQTNQKVKKERDCVEVSNIDAVAGADPKNHGMSYT
SPEAWKISSKSSDLAKRKGSPIPRSLTTACHLPPPHKVQYNSKHKANIGGDYEVSVIDLG
NCDSVPRYQKLTVFGPSQDRSQEPTLVEGTSEDDPVASPSNHSEVNTSAVMNDDEDQVVD
VSASLSTVNRNHSCVSTSAGTPERTADRGYQLDHESSVNKSVNSHHQKRRRLNIPMSCCT
DTEHSNLLNPSRTSICNTDSASRLVHGDLKSADGLCCRSMNMSRCENIKLERCSKPVELS
SNKSAGKKLRIYCTRCQTPLGLQKDGFLVSSSLSSPSKVYLTYLSRHGLSSIDFAQDLIS
SPPAVVNVIVCDASSLNQEILRKFCGEGSAHHSGVWSEKDGCVYKPITCPFCPCENASAM
VLGAQVLATDASNLQSLNKVLLFADRLDVKHEPSSDVKLEPSSEPVTSKQSGAVKPMSPP
PVMDLETFAYKPLKKNPVPLSTRRSKLRLPTMNKSTSPQLVPKVEDP
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccaaatcgatgagaattgcaagaagctcctagatgacaaagttcagggatgc
ccagaattcaagaatgcacagaaactaagtcgtcacccatcccttcagaccggtggctcc
tatgaagttcatgatatcgaggatcttcttagagttgggaaacaagtcaagggatgtcca
tattttgctgcacaaacccttgcagaagcagctcaactggttttctgcccatacaactac
ctaattagtccaattgtcaggagagcaatggacattgatatccgtggctcagttgttatt
cttgatgaagcacacaacatagaagacatatcacgtgaggctggaagtgttgatgttgat
gcagaatcacttgacagtttggatggagaactagcaaggttggccactaatcaggctgtt
gcaatgatataccagcccttgcatgatgtcattgaggggcttagaaattggattactgac
caggaagtcaatgtccgcgataacgagtttgaacatcctgcttcattttggactggtgaa
aatgccctgaaggaactccagagggccggtattactcctgtatacttcccactattgcaa
gactgtgcaacaaaggcagtcaaggctgcttcggatactgagtcagatgaagatcgctta
gctggtcatcatgctatgacacttgagactctattctcctcactgagctactttttcgct
gggaatgggcgccatatgtatgattaccagcttgctttccaacggtttgttcagagagaa
ggcatttctgccactgaaccaagatgtgtgatgagtttgtggtgcctcaatcctgctgtc
gtctttcaagatattgcaaatctgacccaatcagtaatattgacatctggcacactctct
ccaatgggctcctttgcgtctgaacttggtgtacagtttgatgcttgcatggaagctgct
cacgtgatcgatgctgattctcaggtttttgcaagtgtactatcatctggcccaacaacg
catcggttgaatgctagctataaaactgcagatgcatattctttccaggacgaacttgga
gcttcaatagaagaaatatgcagaatagtgcctggtggtgctctagtgttctttcctagc
tacaagttgttggacaaactgaaagtgcgctggactcagacagagcctagagggagcact
gaggaactcgagcctgtcctaaatggatactataatgcaatccttggtaaggttcctctt
aagaaaggcagaggtggtgcaaaacaaatcgtgaagaatcgagtgagaaagaatacccaa
caggaacctggtaaaggaggagctgcttttcttgcagtttgtcgtgggaaggtatctgaa
ggaattgatttctctgatgacaacgctagggttgtggtcattgttggcattccttttcca
aatataaatgatgtccaagtaaagctgaaaaagagatataatgattcctacaaatcatca
aagaatctgttgagtgggagtgaatggtactgtcatcaagcatttcgtgctctgaatcaa
gctgctggtcgatgtattcggcataaatttgactatggaggcataattttgattgatgaa
cgatatcaggaagagagaaaccttgtacacatttcaaaatggcttaagaactctattaag
ctttatagtagcttccaggagacgatggttgaattgaataagttttttcaaaaggctgag
gaacatataaagatcaaacgtcaagacatgttcactaaggttaagttagatgctgatata
cttgcagctaatggtgataaaagaaagctgccttggccagaatcaaatttcttaaagcag
tcagtactgcaaactaatcagaaggtaaagaaggaagacactggtgtcaaggtttccaac
attgatgctgatatgcttacagtgcacagtgataaaagaaagctgccttcggcagaatca
aatttctcaaaccagtcagggctgcaaactaatcagaaggtaaagaaggaacacggtagt
gtcaaggtgtcagtaccgcaaactaatcagaaggtaaagaaggaacgcgattgtgttgag
gtttcaaatattgatgctgtggcaggagcagaccctaaaaatcatggtatgtcttataca
tcaccagaagcatggaagatctcttcaaaatcttctgacttagcaaagagaaaaggctcc
cccatacccagaagtctaacaacagcatgccatctccctccgccccacaaagtccagtac
aattcaaaacacaaggcaaacattgggggggattatgaagtcagtgttattgacttaggg
aattgtgattctgttcctcgatatcaaaagttaactgtctttggtccatcacaagacagg
tcgcaagagcctactcttgtggaaggaacttctgaagatgatccagttgctagtcccagc
aatcattctgaggtaaatacctctgcagtgatgaatgatgatgaagatcaggtcgtagac
gtgtctgcttcactctcaacagtgaatagaaatcattcttgtgtgtccacatcagcgggc
actcctgaaagaacagctgatagaggatatcagttggatcatgaatcttcagtgaacaaa
agcgtaaattctcaccaccagaaaaggagaaggcttaatattcctatgagctgttgcact
gatacagagcattctaatcttttgaatccttcaagaacatctatttgtaatactgattct
gcttcgaggttggtgcatggagatctgaagagtgctgatgggctgtgttgtagaagtatg
aacatgtccaggtgtgaaaatattaagcttgaaagatgttccaagccagtagagctttcc
tcaaataaatctgcaggaaaaaaacttcgtatttattgcaccagatgccaaacaccactt
ggattgcagaaggatggctttcttgtttcatcctcattgtcatcgccctcgaaagtttac
ttgacatatctttcgagacatggactatcaagtattgacttcgcacaagatctcatctca
tcaccaccagctgtggtaaatgttattgtatgtgatgcttcttcactcaaccaagagatc
cttcgaaaattctgcggcgaaggttctgctcaccattctggtgtttggtctgagaaggat
ggatgcgtatacaagccaataacatgccctttctgcccttgtgaaaatgcttctgcgatg
gtgctcggagcacaagttcttgcaactgacgcatcaaatctacaatcattaaacaaggtg
ctcttgtttgctgatcgtttggatgtcaagcatgaaccctcaagtgatgtcaagcttgaa
ccctcgagtgaaccggtcacaagtaagcagagtggtgctgttaagccaatgtcaccacca
ccagtgatggatctcgaaacatttgcttataaaccattgaagaagaatcctgtaccactg
agcacgaggaggtccaagcttaggttacctaccatgaacaaatccacaagcccacaattg
gtgcctaaagtcgaggatccatag
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