Lolium rigidum (rigid ryegrass): 124653527
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Entry
124653527 CDS
T09103
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124653527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124653527
03110 Chaperones and folding catalysts [BR:
lrd03110
]
124653527
03029 Mitochondrial biogenesis [BR:
lrd03029
]
124653527
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124653527
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
124653527
Messenger RNA biogenesis [BR:
lrd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
124653527
Chaperones and folding catalysts [BR:
lrd03110
]
Heat shock proteins
HSP60 / Chaperonin
124653527
Mitochondrial biogenesis [BR:
lrd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
124653527
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124653527
Exosomal proteins of other body fluids (saliva and urine)
124653527
Exosomal proteins of breast cancer cells
124653527
Exosomal proteins of colorectal cancer cells
124653527
Exosomal proteins of bladder cancer cells
124653527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
PriC
DUF1382
Motif
Other DBs
NCBI-GeneID:
124653527
NCBI-ProteinID:
XP_047048534
LinkDB
All DBs
Position
5:233089566..233094388
Genome browser
AA seq
588 aa
AA seq
DB search
MSITAASFAAPPSSSSLPLLPRRPCRIPRPGRVSRRLAVRADVKLISSGDACRRGLAAGI
HKLADAVAVTLGPKGRNVVIDQDDVPKVINDGVTIAKAIELPNAIEHAGAMLLQEIASKT
NSSVGDGTTTAIILAREIMSLGLLAVASGANPVALRKGIDKAVHELIVILKAKCIPVSTK
EDIKAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTTVEVQEGMKIDKGYIS
PHFITNPDKAIVEFENARVLLTDQRVNEIQEILPLLEKTTQLSVPLLIIAEDVSHTVYST
LVLNKLNGLLNVAVVKCPGLGDEKKAILQDIAIMTGADFFVSDLGWGLQAITSDQLGMAQ
KITITSESTTIIAHPSMRPEIEARIMQLKKDVQETTSAYLKERFSARIAKLSRGVAVIKV
GAATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKHIPSIMDLVDDPEEKIG
VHIVGKALLVPAMTIARNAGADGSAVVEKILESEWRVGYNAMTDRFEDLVDAGVVDPCRV
ARCVLQNSASIAGLILMTQAMMFDKVKKKKSPIPEIPGLPPLQINQNA
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtctattaccgcagcttccttcgccgcgcccccctcctcctcctccctgccgctgcta
cccagacggccgtgtcggatacctaggccggggagggtctcccgccgcctggcagtgcgg
gcggacgtcaagctgatatcttccggcgacgcctgccgccgcgggctcgccgcaggcatc
cacaagctcgctgacgccgtcgcggtcaccctcggccccaaagggaggaatgtcgtgatt
gaccaagatgatgttcctaaagtaattaatgatggtgtcacgatcgccaaggctatagaa
ttaccaaatgcaattgagcatgcaggcgcaatgctactacaagagattgcatccaagaca
aacagtagtgtcggtgatggaaccacaacagcgattattttggctcgcgaaataatgagc
cttgggttattggctgttgccagcggtgctaacccagttgctttgagaaagggcattgac
aaagctgttcatgaactgattgtgatcttgaaggcaaaatgtatccctgtgagtacaaag
gaggacataaaagccgtagcttcaatatcagctggcaatgatgaatatgttggtgatcta
attgctgatgcattggagaagataggtcctgatggaataatcaaaatcgagtcctcatct
tcgatatatactacagttgaggtgcaagaagggatgaagatagacaagggttacatctcc
cctcattttatcacaaatccagacaaagcaattgtcgaatttgaaaatgctagagtgctt
ttaactgatcaacgggtgaacgaaatccaagagatacttcctttgctggagaagaccacc
caattgagtgtccctttgttgattattgccgaggatgtttcacataccgtctactcgact
ctggttcttaacaaactgaatggtttgctaaatgttgcggttgtcaaatgtcctggtttg
ggagatgaaaagaaggctattctgcaagatatagccattatgacaggtgcagatttcttt
gtcagtgatcttggttgggggcttcaagcaattacttctgatcagcttggtatggctcag
aagataactatcactagtgaatctacaactataattgcacatccctctatgagaccagag
attgaggccaggatcatgcaactaaagaaagatgttcaggaaacaacaagtgcctatcta
aaagaaaggttttctgcaagaattgctaaactttcaagaggtgttgcagttatcaaggtc
ggagcagccacggaagctgaacttgaggataggaaattgagagcggaggatgcaaagaat
gcaacttttgcagccattagcgaaggcataacacctggtggtggagtaacatatgttcaa
ttatcaaagcatattcccagtatcatggatcttgtggatgacccagaagagaagattggt
gttcatattgtgggcaaggcactccttgtccctgctatgacgatagctcgcaatgctggt
gcagatggttcggctgttgtagagaagattctggaaagcgagtggcgagttgggtacaat
gcgatgacggacaggttcgaagacctcgttgatgctggtgtggttgatccatgcagggtt
gcaagatgtgtgctccagaactctgcttctattgctgggctgattctgatgacccaagct
atgatgtttgacaaagtaaagaagaaaaagtcgcccattcctgagatcccaggcctcccg
ccgttacagataaaccaaaatgcttaa
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