KEGG   Lolium rigidum (rigid ryegrass): 124653986
Entry
124653986         CDS       T09103                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03013  Nucleocytoplasmic transport
lrd04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    124653986
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    124653986
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrd03019]
    124653986
   04131 Membrane trafficking [BR:lrd04131]
    124653986
Messenger RNA biogenesis [BR:lrd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     124653986
Membrane trafficking [BR:lrd04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    124653986
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    124653986
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    124653986
SSDB
Motif
Pfam: WD40 Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR35_TULP_N WD40_Gbeta WDR55 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_Vps41 ANAPC4_WD40 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd NBCH_WD40 Beta-prop_HPS5 Beta-prop_WDR41 Beta-prop_NOL10_N Laminin_G_3
Other DBs
NCBI-GeneID: 124653986
NCBI-ProteinID: XP_047048990
LinkDB
Position
5:202116595..202118307
AA seq 305 aa
MPPHKIETGHQDVVHDVVMDYYGKRVATASSDNTIKVIGVSGNSHQLLATLSGHQGPVWQ
VAWAHPKFGSMIASCGYDSRVIIWKEGNKPDEWVQAHTFTEHKSSVNSIAWAPHELGLCL
ACGSSDGNISVFTARSDGVWDTSRIDQAHPVGVTSVSWAPAMAPGSLITTGPSGQFEYVQ
KLASGGCDNTVKVWKLTNGSWRMDCFPALQMHKDWVRDVAWAPNLGLPKSTIASASQDGT
VVIWTEPKEGEQWQGRVLHDFEAPVWRVSWSLTGNILAASDGNNNVTLWKEAVDGEWQQV
TAVEP
NT seq 918 nt   +upstreamnt  +downstreamnt
atgcctccccacaagatagaaaccgggcaccaggatgtggtgcacgatgttgtcatggat
tactacggtaagcgtgtcgcgacggcctcctcggacaacaccatcaaggtcatcggcgtc
agtggcaactcacaccagctgctcgcaactctcagcgggcaccaggggccagtctggcag
gtagcgtgggctcatcccaagttcggctccatgatcgcgtcctgcgggtacgatagccgc
gtcatcatctggaaggaaggcaacaagcccgatgagtgggttcaggcgcatacgttcact
gagcacaagtcctctgtcaactccattgcgtgggcgcctcatgagcttgggctgtgctta
gcctgtgggtcgtctgacgggaacatctcagtcttcacggctcgctctgatggtgtctgg
gacacttcgcgcattgaccaggcgcatccagtgggggtgacatccgtctcctgggctcca
gcaatggcccctggttccctgatcaccacaggaccttctggccagtttgagtatgttcag
aaacttgcatctggtggttgtgataacactgtcaaggtatggaagctcaccaatggaagc
tggaggatggattgcttccctgctctccagatgcacaaggactgggtgagggatgtagcc
tgggctccaaacctcggccttccaaaatctacgatcgccagcgcctctcaggatggaact
gttgtcatctggaccgaaccgaaggaaggcgagcagtggcaaggcagggttctgcatgac
ttcgaagcccctgtgtggagggtgtcgtggtcgctgactgggaacattctggctgcttct
gatggcaataacaatgtgaccctgtggaaggaagctgttgatggcgaatggcagcaagtg
acggctgttgagccctag

DBGET integrated database retrieval system