Lolium rigidum (rigid ryegrass): 124654227
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Entry
124654227 CDS
T09103
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124654227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124654227
03036 Chromosome and associated proteins [BR:
lrd03036
]
124654227
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124654227
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124654227
PBAF complex
124654227
GBAF(ncBAF) complex
124654227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
124654227
NCBI-ProteinID:
XP_047049199
LinkDB
All DBs
Position
5:140804004..140811932
Genome browser
AA seq
770 aa
AA seq
DB search
MPRKASSSSDAKLKWRKRKRSQDPSPSKPDHSDDSDSAPEDDAPHASANGAQTLDDDDLR
DAEVLSSSEPISAFPAAARRTITRVHPSVLAAVAADRAVSAGDTTAPGPALENISHGQLQ
VLAAMLPDHPSLSNDPDKPSSYVCTVPPLMEGQGVPKQFYGKLLLVPRHADWFSPATVHR
LERQVVPHFFSGKSPGNTPEKYIMLRNKVIVKYLERPVRRLAFAECQGLVTNTTELYDLS
RIVRFLDTWGIINYLAAGSVHRGLRLATSLVREEQTGELQLQSAPLKSIDGLVLFDRPKC
SVRAEDIASVASTSSALEVPNGDTGLADLDEKIWERLSESFCSYCLQPLPSLHYESQKEA
DIALCSDCFHDARFVPGHSSLDFQRVDGTKDGLDNDGDSWTDDETLLLLEGVEKYNDNWN
GIADHVGTKSKAQCIHHFIRLPVEDGLLESMEVPEASVSSRVQSNGFSHSNSNGSISGSF
PQSSQPGQQLPFVNSANPVMSLVAFLASAVGPRIAASCANAALSVLTRDDSRMCPEGNDA
MGQAARPNYDASSSVSPENVKYAAMCGLSAAATKCKLFADQEEREIQRLAATIINHQLKR
LELKLKQFAEVETLLLKESEQVERGRQNLNAQRTRVMSARFGSSGGPMPGGSSTMASNPM
NQANPRPPAMQGAMPPANMQAYYANNMQGHPAQLAFLQQQQQQQQQQQRQQQQQQQQHML
SFGPRLPLSAIHPGSTSAPSVMFNPGTPNSATQSHHPMLRPPTGNNSSFG
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaggcctcctcctcctcagatgcgaagctcaagtggcgcaagcggaagcgc
tcccaggacccctccccatccaagcccgaccactccgacgactccgactccgcgccggaa
gacgacgcgccccacgcctccgccaacggggcccaaaccctagatgacgacgacctccgc
gacgcggaggtgctctcctcatccgagcccatttccgctttccccgcggccgcccgccgc
accatcacccgggtccacccatccgtgctcgcagccgtggccgccgaccgtgccgtgtct
gctggcgacaccaccgccccgggccccgcgctcgagaacatctcgcacggccagctgcag
gtgctcgcggccatgctcccggaccacccgtccctctccaacgacccggacaagccgtcc
tcctacgtctgcaccgtgcctccgctcatggaaggccagggcgtgcccaagcagttctac
ggcaagctgctcctcgtgccccgacacgcagattggttctcgccggcgacggtgcacagg
ctggagaggcaggtggtgccgcacttcttctcggggaagtccccggggaacacgccggag
aagtacatcatgctgaggaacaaggtgattgtcaagtacctggagcggcccgtgaggagg
ctcgcgtttgcagagtgccaggggctcgtcaccaacacgactgaactgtacgacctgagt
aggatcgtcaggttcctggacacgtgggggatcattaactacctcgccgctgggtctgtg
caccggggcttgagattggcgacgtcgttagtcagggaggagcagacgggggagctgcag
ctgcaatccgcgccgttgaaatcgattgatggcttggttttgtttgatcggccaaagtgc
agcgtccgggcggaggatatcgcgtcggtggcctcgacttcctctgctctggaggtgcca
aatggtgatactggtcttgcagacttggatgaaaagatttgggagcgcctgtccgagagt
ttttgtagttattgcttacagcctttgcccagcttacactatgagtcacaaaaggaggca
gacattgcgctttgctcggattgtttccacgatgcaagatttgttcctggccactcaagc
ttagattttcagagagtggatggaacgaaagatggattagacaatgacggggacagctgg
actgatgatgaaactctactgttgctagagggtgtagagaagtacaatgataactggaat
ggtattgctgaccatgtcggaacaaagtcaaaggcgcaatgtattcaccattttattcgt
cttccagtggaagatggtttgttagagagcatggaagtgccagaagcatctgtttcatct
agagtacaaagcaatggattttcgcattcaaattccaacggcagcatttcaggaagcttt
ccccaaagtagccaacctggacagcagcttccattcgttaattccgctaatccagtaatg
tctctggttgcattcttggcctctgcagtaggaccaagaatagcagcatcctgtgcaaat
gctgctttatctgttttgacgagagatgattccaggatgtgtccagaaggcaatgatgct
atgggtcaagctgctcgtccaaactatgatgcctcatcatctgtctctcctgaaaacgtc
aaatatgctgcaatgtgtggcttgtcagcagcggcaacaaagtgcaaactttttgcagat
caggaggagcgtgaaattcagagactggcggccaccatcataaaccaccagttgaagaga
ttggagttgaagttgaagcaatttgcagaggtcgagaccctgcttttgaaggaaagtgag
caggttgagaggggaaggcagaatcttaatgctcagcgtacccgggtgatgtcagctcgg
tttggttccagtggaggcccaatgcccggaggcagcagcaccatggcctcaaatccaatg
aatcaagccaaccctcgaccaccagcaatgcaaggagcaatgcctccggccaacatgcaa
gcgtattacgccaataacatgcagggacatccagcccagcttgctttcttgcagcagcag
cagcagcagcagcagcagcaacagcgtcagcagcagcagcaacaacagcagcatatgctc
tcatttgggcctcgcctgccactctcggctatccacccaggctcaacgtcagcaccaagc
gtcatgttcaatcctggcacgcccaattcggccacccaaagccatcatccaatgctgaga
ccgcccactgggaataattctagttttggttaa
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