Lolium rigidum (rigid ryegrass): 124654358
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Entry
124654358 CDS
T09103
Name
(RefSeq) protein RDM16-like
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124654358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124654358
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124654358
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Fusion_gly
Motif
Other DBs
NCBI-GeneID:
124654358
NCBI-ProteinID:
XP_047049324
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Position
5:156876529..156880502
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AA seq
857 aa
AA seq
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MDRDRSSRRDRDRDRDDDRSSRRDRDRDDDRHAARDRDRDEDRHRRRRHDGDGSHHKSRD
AEDDRRHHKRGADDTSAAAVADEDRRRARRRRSRSPSESSPPPAKRDRSSSRAPRDSADP
ADREQQPPPPPSTRKRKEHDSGGRRDGEEPADREGGKRARAAAVDPAPRTEERPRRERRR
FDDGDENGDQKRGRDGSSREHKKVEPGANGDSHGGAAPNVGAQQPLNSAPAVAVPSADPV
ASKVSSITTTNENGGVSIRSDQVTGKSSTDGTPNSAAGRSSNLSLDALAKAKKALQLKKE
LSEKLKRLSGLNNKLGTALSDAQTPKKETQPVSGSSASSGHAGAASELPASIASGMAAAA
AVAAGISGLTNIPNLDAVKRAQELAASMGFRQDPQFAPVINMFPGTSSELAVSQRPAKAP
VLRLDAQGREIDEHGNVISMTKPSSLSTLKVNINKQKKDAFQIIKPDLESLAKSTVHFDE
RMGINPTKLLRPKRPGFIFVEEGKLTRQAELQRIKSQFGDAQAKELKVKQAQLAKAKVEV
DMNPNLIEIAPGGRPPKQKQKEEIPDIEPWDSKILISATYEDDISLEKLNMDRITIYVEH
PEPLEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLLEPPKPKVKMSN
LMKVLGAEATQDPTRMEMEIRTAAAEREQAHVDRNIARKLTPAERREKKERKLFDDPNTL
DWIVCVYRIRDLSHPQTRFKVDVNAQENRLTGAAVIADGISVVVVEGGKKSIKRYNKLML
NRIDWAAAVGGEDDAEDEPDKPVNSCALVWQGSVGKRTFTKFSVHQCRSEAAAKKVFADA
SVPHYWDLAVNFSEDSS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgaccgctcctcccgccgggaccgcgaccgcgaccgcgacgacgaccgctcc
tcccgccgcgaccgggaccgcgacgacgaccgccacgccgcccgcgaccgcgaccgcgac
gaggaccgccaccgccgccgccgccacgacggcgacggcagccaccacaagtcgcgcgac
gccgaggacgaccgccgccaccacaagcgcggcgccgacgacacttccgctgctgccgtc
gccgacgaagaccgccgccgcgcgcgcaggcgccgctcgcgctccccctcagagtcgtcc
ccgccccccgcgaagcgcgaccgctcctcgagccgcgcgccgcgggactccgcggacccg
gcggaccgggagcagcagcccccgcccccgccgtcgacgcggaagcggaaggagcacgac
agcgggggccgccgcgacggcgaggagcccgccgaccgggagggtgggaagagggccagg
gccgcggcggtggatccggccccgcggacggaggagaggcccaggcgggagcgcaggagg
ttcgatgacggagatgagaatggtgatcagaagaggggcagggacggttcgtctcgtgag
cacaagaaggtagagcctggtgctaatggagactcacacggcggcgcagcgcctaatgtt
ggtgcacagcagccgcttaattctgcacctgctgttgcggtgccatctgctgatcctgtt
gcttcaaaggtatcctcgattactaccaccaatgaaaatgggggagttagtattagatct
gatcaagttactggaaaatctagtacagatggaactccaaattcagccgctggcagaagt
agtaacttaagtcttgatgctttagccaaagctaaaaaagctttgcaactgaagaaggaa
ctttcagaaaaactcaagaggttatctgggcttaataataaacttggtactgctctttct
gatgcgcaaactcctaagaaagaaacccagcctgtttctggctcaagtgcgtcttcagga
catgctggtgcggcttctgaactgcctgctagtattgcatctgggatggcagcagctgca
gctgttgcagctggtatttcaggccttaccaacattcccaatttggatgctgtgaagcga
gcacaagaacttgctgctagtatgggatttcgccaggatccacagtttgcacctgttatc
aacatgttccctggcacatccagtgaattagctgtttctcaaagacccgccaaggctcct
gttctccgtcttgatgctcaaggtagggaaattgatgagcatgggaatgttatcagcatg
accaagccaagcagtctgagtactctgaaggtcaacattaataagcagaagaaggatgcg
ttccagattatcaaacctgacctggagtcacttgcaaaatctactgttcattttgatgaa
aggatgggcatcaacccaaccaagctccttcgtcctaaaaggccaggattcatatttgtt
gaggaaggcaagcttacgaggcaggctgaattgcagaggattaagagtcaatttggtgat
gcacaagctaaagagcttaaagtaaaacaagctcaacttgctaaggcgaaggtcgaagta
gacatgaatccaaacctaattgaaattgctccgggcggaaggcctccaaagcaaaagcag
aaggaagagattcctgacattgagccatgggactcgaaaattttaatttctgccacgtac
gaggatgacatctctttggaaaagcttaatatggataggataaccatctacgtagaacat
ccagagccattggaaccacctgctgagcctgcaccaccaccgcctcagcctcttaagctg
actaagaaggagcagaagaagctcagaacacagaggcgcctcgcaaaggaaaaagatagg
caagaaatgattaggcaaggcctcttggagccaccaaagcccaaggtcaagatgagcaac
cttatgaaagtactgggtgcagaggctacacaggatccaacacgtatggagatggaaata
cgaacagctgctgcagagcgtgagcaggctcacgtggatcgcaatattgcccgcaaactc
acaccagcagagcgccgtgagaagaaggagaggaagctttttgatgatcctaacacacta
gactggattgtttgtgtgtacagaatcagagacctgtcacaccctcagacacgctttaaa
gttgacgtgaatgctcaagagaaccggctgactggtgctgcagttatcgcagatggtata
agtgttgtggttgtggaaggagggaagaagtcaatcaagaggtacaataagctgatgctg
aaccggattgactgggctgctgcagttggtggcgaggatgacgctgaggacgaaccagac
aagccggtgaatagctgtgcattagtatggcaaggtagtgttgggaagcgcacctttacc
aagttcagtgtgcatcagtgccggagtgaggctgctgccaagaaggtgtttgcagatgct
tctgttccacactactgggacctggctgtcaacttttcggaagattcatcttga
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