Lolium rigidum (rigid ryegrass): 124654421
Help
Entry
124654421 CDS
T09103
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124654421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124654421
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124654421
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124654421
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
124654421
NCBI-ProteinID:
XP_047049382
LinkDB
All DBs
Position
1:207187343..207188215
Genome browser
AA seq
290 aa
AA seq
DB search
MFSMFPPPPASFHGRVPPPQTTDHPVPMPAPHVPVLVHPVWAWSFHQEAANLRHFAEGAR
YVAVNVHYPGLVHHPGKDQDALTDENRYPILKANVDALKPLQVGIAVCDRDGKTEAWEFN
LRDFRRHSDPHDANSLAYLAGRGLDVDTFANHGVDAWSLGAMLLNYSGLIGPRRGLSWVT
YTGAYHVAYLLKIVTGGCPLPNDLAGFVGAVRHFLGDQVYDVAGMAAECPKLPVGLERIA
AHLGFHPPWNSPRLAAAAGVRALQVFRILEDGELRGKVSRYRGVLQGLHH
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgatgtttccaccgccgccggcttctttccacggccgcgtgcctccgccgcag
accacggaccaccccgtccccatgccggcgccacacgtccccgtcctggtgcaccccgtg
tgggcctggagcttccaccaagaggccgccaacctccgccacttcgccgagggcgcccgg
tacgtcgccgtcaacgtgcactaccccggcctcgtccaccatcccggcaaggaccaggac
gccctcaccgacgagaaccgctaccccatcctcaaggccaacgtggacgccctcaagccg
ctccaggtcgggatcgccgtctgcgaccgcgacggcaagaccgaagcttgggagttcaac
cttcgggacttccgccgccactctgatccgcacgacgcgaactccctagcctacctcgcc
ggtcgtggcctcgacgtggacacgttcgcgaaccacggcgtcgacgcctggagcctcggc
gccatgctgctgaattactccggcctcatcgggcctcggcgcggcctgtcgtgggtcacc
tacaccggtgcctaccacgtcgcctacctgctcaagatcgtcaccggcggctgcccgctc
ccgaacgacttggccgggttcgtgggcgcggtgcggcacttccttggcgaccaggtctac
gacgtcgcggggatggccgccgagtgcccgaagttgcccgttgggctggagcgcatcgcc
gcccacctcggtttccatccgccctggaatagcccgaggctcgctgctgccgccggcgtg
cgcgcgctgcaggtgttcaggatcttggaggacggagagctccgaggcaaggtcagcaga
tacagaggtgtgcttcaaggcctgcatcactag
DBGET
integrated database retrieval system
