Lolium rigidum (rigid ryegrass): 124654441
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Entry
124654441 CDS
T09103
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124654441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124654441
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124654441
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124654441
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
124654441
NCBI-ProteinID:
XP_047049398
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Position
1:complement(207297682..207298473)
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AA seq
263 aa
AA seq
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MPAPHVPVLVHPVWGWNFHQEAARLRHFAEGARYVAVNVHYPGLVHHPGKDQDALTDEKR
YPILKSNVDALKPLQVGIAVCDRDGKTEAWEFNLRDFRRHSDPHDANSLAYLAGRGLDID
TFANHGVDAWSLGAMLLNYSGLIGHWRGLSWVTYTGAYHVAYLLKIVTGGCPLPNDVAGF
VGAVRHFLGDQVYDVAGMAADCPKLPVGLERIAAHLGFHPPWNSPRLAAAAGVRALQVFR
SLEDGELRDKVSRYRGLLQGLHH
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgccacacgtccccgtcctggtgcaccctgtgtggggctggaacttccaccaa
gaggccgccaggctccgtcactttgccgagggcgcccggtacgtcgccgtcaacgtgcac
tacccgggcctcgtccaccatcccggcaaggaccaagacgccctcaccgacgagaagcgc
taccccatcctcaagtccaacgtggacgccctcaagccgctccaggtcgggatcgccgtc
tgcgaccgcgacggcaagaccgaagcttgggagttcaacctccgggacttccgccgccac
tctgatccgcacgacgcgaactccctagcctacctcgccggtcgtggcctcgacatcgac
acgttcgcgaaccacggcgtcgacgcctggagcctcggcgccatgctgctgaattactca
ggcctcatcgggcactggcgcggcctgtcgtgggtcacctacacgggagcctaccacgtt
gcctacctgctcaagatcgtcaccggcggctgcccgctaccgaacgacgtggccgggttc
gtcggcgccgtgcggcactttctgggcgaccaggtctacgacgtcgccgggatggcggcc
gactgcccgaagttgcccgttggactggagcgcatcgccgcccacctcggcttccatccg
ccctggaacagccccaggctcgccgccgccgccggcgtacgcgcgctccaggtgttcagg
agcttggaggacggagagctccgagacaaggtcagccgatacagaggtctgcttcaaggc
ctgcatcactag
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