Lolium rigidum (rigid ryegrass): 124655431
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Entry
124655431 CDS
T09103
Name
(RefSeq) uncharacterized protein LOC124655431
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124655431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124655431
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124655431
04121 Ubiquitin system [BR:
lrd04121
]
124655431
Enzymes [BR:
lrd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124655431
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
124655431
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124655431
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124655431
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124655431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
PcfJ
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
124655431
NCBI-ProteinID:
XP_047050283
LinkDB
All DBs
Position
5:140398669..140406131
Genome browser
AA seq
1172 aa
AA seq
DB search
MMTMSDDGDRTCPLCAEEMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACR
TRYDKDRIVKMAAATCDRTAVADKNTDKKQKTQKVKSKALTVEAKKHLASVRVIQRNLVY
IIGLPANLCNESVLERREYFGQYGKVLKVSVSRPTGTASQQQTAANNGISVYITYAKEEE
AIRCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEI
ISAYTRSRVPQMASTVSQRRAGTVLPPPADDFSYSAVVSAKHTIKNGTTNTTSQSRLSPP
NSSSGRSTLPPATSWGHRDLNTRTSTTEVASSQSLVKSKSEAQSNTYSSSSMISSARLPS
SWNDDTSTVPKLTEGRQVSERDSLSKTLKPYRPGIAKETQAATSLESSLDIDFSTIPSAW
NDDEVVASDEASKGSEQKQVVNGQLVPPASSNPTEPGQLVSKSSSSTTNNAEALNSSKQS
LTDCVSRSAISNSDVKGGNGDHQFTNMGPKNPTLRAINSQPNHTGSESRPRDTEVDKLLS
VGVSSLTLDSKDKVHSKEENQQPGAVLNTSVPLSQSLNNEQSHLKLAGLLSSENKDSVFS
SQSSSDKHLDWSSELQSSRATSPLNDIWNSSVATDKSHVRMLDTTDQTSSSSYVPTANTS
HISLWNDKEINRTSTSDNRSSGTMMYTGLLSSTDNNSTLLNGRQEGLGPMYTPGMVSEHS
GMRNHQHGLLDAARNDNVGGFGKAIGGNKDEGSIISDILSLEFDPWDESYSTANNFVKLL
NESEKNDAPSWKSKGSSNESRFSFARQDNQRNFQDSSFRNPGSDQNFSLLSQNSHGNFYQ
NGAVFQSSEEEFSKSNPLAMPDIATAGSSRSKISAPPGFSAPARVPPPGFSSQDGLNPPP
GFSSGFSSQDMLNPPHGFPSGFSSQAGSNPPHGFSSQAGSNPPHGFSSQAGSNPPRGFNS
GFSSQDVSNIPPGFSAGFSSQNGSNQAYGSTYSETRLLDNLFGSHTNQYQPQMSRHTSDI
EFIDPAILAVGKGRMPGVSDSGLDLKNSPFSTQLQTSNNDPRLQLLMQQSMPSHQNLRYP
DHGQDSFNSMNDNYLASRLLPQNHGSLSSYAQMSLQQPRNSQLANGHWDGWSDLRQGNNV
PMSDMSRMLYPTEANNFHMMGSNDMYNRTFGL
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccatgagcgacgacggagaccgcacctgcccgctctgcgccgaggagatggac
atcactgaccagcagctcaagccctgcaaatgtggctacgagatttgtgtctggtgctgg
caccacatcattgatatggcggagaaggaggacaccgaggggcgttgccctgcttgccgc
acgcgctacgacaaggacaggattgtcaagatggcagctgccacttgtgacaggacggca
gtggcagataaaaatacagacaagaaacagaagacccaaaaggtcaagtcaaaggcacta
actgtggaagctaagaagcatctcgccagtgtcagagttatacagagaaacctcgtgtat
ataattggcctgcctgcaaatttatgcaatgagagtgtactcgagcgcagggaatacttt
ggtcagtatgggaaggttttgaaggtttcagtttctcgtccaactgggactgcttcccag
cagcagacagcggcaaataacggtatcagcgtatatattacttacgccaaagaagaagag
gccatccggtgtattcaggctgtacacaattttgtcttggaagggaaagtgctaagagca
tgctttggtactacaaaatattgccatgcatggctacgaaacatgacatgtgggaatcca
gattgtctctatttacatgatgtaggcagtcaggaggatagtttcactaaagatgagata
atctcagcatataccaggagtagggttcctcaaatggcgtctactgtttctcaaagacgt
gcaggaactgtgttgcctcctccagcagatgatttctcttatagtgcggtggtttcagcc
aaacatacaatcaagaatggaacaactaatacaacaagccaatcaagactgtcacctcca
aacagtagttcagggaggtccacactgccaccagctacttcatgggggcatcgtgatctg
aacacaaggacatcaacaactgaggtggcatcctcacaatctcttgtaaaatcaaaatca
gaggcacagagtaatacatattcgagttcttctatgatttcgagtgcaaggctaccttct
tcatggaatgatgatacaagcacagtaccaaaattgactgaaggacgacaagtatcagag
cgagatagtctatctaaaaccttgaagccgtatagacctggtattgcaaaggaaacccaa
gctgcaacatcactggagtcgtcattggacatagacttttctacaataccttcagcttgg
aatgatgatgaagttgtagcatcagacgaagcgtcaaaaggaagtgagcaaaaacaagtt
gtaaatggacagcttgttcctcccgcgtcttcaaatccaacagagccaggccagcttgtg
tctaagtcatcatcatcaacaacaaataatgctgaagcgttaaacagttccaagcaaagt
cttacagattgtgtgtcacgttcagcaatatctaattcagatgttaagggtggtaatggt
gaccaccagtttaccaatatgggtcctaaaaaccctactttgagagctataaacagtcaa
ccaaatcacactggtagtgagagtagaccccgggacacagaagtcgataagttattatct
gttggagtatcttcactaactttagatagcaaagataaggttcatagtaaggaagaaaac
caacagccaggtgcagttcttaatacgtcagtgcctttgagtcaaagtttgaacaatgaa
caatctcatttgaagcttgccgggcttttgtcatcagaaaataaggactccgtattttct
tctcaatctagttctgataagcatcttgactggagttcagagctgcaaagttctcgtgcg
acttctcctttaaatgacatatggaattcttctgtggccactgataaatcccatgtcagg
atgctggataccacagatcaaacatcatcttcatcttatgtccctactgctaatacatca
catatttctttgtggaatgataaagaaattaaccgtacttcgacaagtgataatagatct
tctggcaccatgatgtacactgggttgctatcttcaactgacaacaattctaccttgttg
aatggacgtcaagaggggctaggacctatgtatacgcctggtatggtttccgaacattct
ggtatgagaaatcaccagcatggactactggatgcagcaagaaatgataatgtaggaggt
tttggcaaggctataggtggaaataaggatgagggcagcataatatctgatattttgtct
ttggagtttgatccatgggatgagtcatattcgactgctaacaattttgttaagttgctt
aatgaatctgaaaagaatgacgcgccttcatggaaatcaaaaggcagcagtaatgagtcg
agattttcatttgctagacaggataatcaacggaatttccaggattcatctttcagaaat
cctggtagtgatcagaatttcagtttgctatcccagaactctcatggcaacttttatcag
aatggcgccgtgttccagtcttctgaggaagagttctcaaagagcaatcctcttgctatg
ccagatatagcaactgctggctcttcaaggtccaaaatatctgcacctcctggattttcg
gcaccagcgagagtcccccctcctggattttcatctcaggatgggttgaatccaccacct
ggattttcttcaggattctcatctcaggatatgttgaatcctcctcatggatttccttct
ggattttcatctcaggctggatctaatccccctcatggattttcatctcaggctgggtct
aatccacctcatggattttcatctcaggctgggtctaatccacctcgtggatttaattct
ggattttcttcccaggacgtgtctaatatccctcctggcttttctgcggggttttcatcc
cagaatgggtctaaccaggcatatggctcaacatactcagaaactcgtctactcgataat
ctttttggtagccacaccaatcagtatcaaccacagatgtctagacacacaagtgacata
gaatttattgatcctgctatactggctgtgggcaaagggcggatgccaggagttagtgat
tcagggttggatctaaaaaattctccattttcaacacagttgcaaacatcaaataatgat
ccaaggcttcagttacttatgcaacagagtatgccctctcatcaaaatctcagatatcca
gaccatggtcaggattcattcaactctatgaatgataattatctggcatcccgacttttg
ccacagaaccatggttctttatcctcttatgcccagatgtcactccaacaacccagaaac
tcacagcttgcaaatggtcactgggatggctggagtgatttgagacaggggaataatgtt
cccatgtcagacatgtcgaggatgttatacccaactgaagcgaacaactttcacatgatg
ggttcaaatgatatgtataacagaacctttggactttaa
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